-
Northeastern University
- Boston, MA, USA
- https://gyorilab.github.io
- @benjamingyori
Highlights
- Pro
-
indra Public
Forked from sorgerlab/indraIntegrated Network and Dynamical Reasoning Assembler
-
efo Public
Forked from EBISPOT/efoGithub repo for the Experimental Factor Ontology (EFO)
Makefile UpdatedJul 24, 2024 -
go-ontology Public
Forked from geneontology/go-ontologySource ontology files for the Gene Ontology
Makefile Creative Commons Attribution 4.0 International UpdatedJul 23, 2024 -
obonet Public
Forked from dhimmel/obonetOBO-formatted ontologies → networkx (Python 3)
Python Other UpdatedJul 19, 2024 -
gilda Public
Forked from gyorilab/gildaGrounding of biomedical named entities with contextual disambiguation
Python BSD 2-Clause "Simplified" License UpdatedJul 19, 2024 -
protmapper_paper Public
Forked from gyorilab/protmapper_paperCode to generate results and figures relevant to the ProtMapper manuscript.
Python UpdatedJul 14, 2024 -
protmapper Public
Forked from gyorilab/protmapperMap amino acid sites of post-translational modifications from models or data to reference positions.
Python BSD 2-Clause "Simplified" License UpdatedJun 26, 2024 -
sssom-py Public
Forked from mapping-commons/sssom-pyPython toolkit for SSSOM mapping format
Python MIT License UpdatedJun 20, 2024 -
Python framework for Systems Biology modeling
Python BSD 2-Clause "Simplified" License UpdatedJun 18, 2024 -
PhyloX Public
Forked from RemieJanssen/PhyloXA python package with tools for constructing, manipulating, and analyzing phylogenetic networks.
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 30, 2024 -
-
sympy Public
Forked from sympy/sympyA computer algebra system written in pure Python
Python Other UpdatedFeb 17, 2024 -
y0 Public
Forked from y0-causal-inference/y0❓y0 (pronounced "why not?") is for causal inference in Python
Jupyter Notebook Other UpdatedDec 4, 2023 -
eliater Public
Forked from y0-causal-inference/eliaterA high level, end-to-end causal inference workflow
Python MIT License UpdatedNov 27, 2023 -
odinson Public
Forked from lum-ai/odinsonOdinson is a powerful and highly optimized open-source framework for rule-based information extraction. Odinson couples a simple, yet powerful pattern language that can operate over multiple repres…
Scala Apache License 2.0 UpdatedOct 18, 2023 -
experiments Public
Forked from DARPA-ASKEM/experimentssmall experiments and prototypes
Jupyter Notebook UpdatedJul 11, 2023 -
famplex Public
Forked from sorgerlab/famplexNamespace encoding hierarchical relationships between proteins, protein families, and protein complexes.
Python Creative Commons Zero v1.0 Universal UpdatedJun 11, 2023 -
probonto_ontology Public
Forked from probonto/ontology -
human-phenotype-ontology Public
Forked from obophenotype/human-phenotype-ontologyOntology for the description of human clinical features
Makefile Other UpdatedApr 27, 2023 -
-
controlled-vocabulary Public
Forked from calipho-sib/controlled-vocabularyControlled vocabularies used in neXtProt - From SIB CALIPHO group; neXtProt project
UpdatedFeb 27, 2023 -
GITM Public
Forked from aaronjridley/GITMThe Global Ionosphere/Thermosphere Model
Fortran GNU General Public License v3.0 UpdatedFeb 6, 2023 -
apollo-sv Public
Forked from ApolloDev/apollo-svRepository for Apollo-SV ontology. Versioning Apollo-SV independently of the software was made easiest by having it as a separate repository.
Shell Creative Commons Attribution 4.0 International UpdatedFeb 5, 2023 -
mouse-anatomy-ontology Public
Forked from obophenotype/mouse-anatomy-ontologyOntologies for mouse anatomy and development
Makefile Other UpdatedNov 17, 2022 -
emmaa Public
Forked from gyorilab/emmaaEcosystem of Machine-maintained Models with Automated Analysis
Python BSD 2-Clause "Simplified" License UpdatedOct 22, 2022 -
ASKEM-TA1-Demo-2022-10 Public
Forked from ml4ai/ASKEM-TA1-Demo-2022-10Repository devoted to the ASKEM TA1 Working Group Demo for Oct 2022
UpdatedOct 11, 2022 -
HumanDiseaseOntology Public
Forked from DiseaseOntology/HumanDiseaseOntologyRepository for the Human Disease Ontology.
Makefile Other UpdatedSep 20, 2022 -
-
bioagents Public
Forked from sorgerlab/bioagentsBiological reasoning agents
Python BSD 2-Clause "Simplified" License UpdatedJun 15, 2022 -
cell-ontology Public
Forked from obophenotype/cell-ontologyAn ontology of cell types
Makefile UpdatedJun 14, 2022