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@gyorilab

Gyori Lab for Computational Biomedicine

Accelerating discovery in biomedicine using AI @ Northeastern University

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  1. emmaa emmaa Public

    Ecosystem of Machine-maintained Models with Automated Analysis

    Python 10 10

  2. indra_db indra_db Public

    A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own content and knowledge access. Our implementation of the dat…

    Python 16 10

  3. gilda gilda Public

    Grounding of biomedical named entities with contextual disambiguation

    Python 37 11

  4. protmapper protmapper Public

    Map amino acid sites of post-translational modifications from models or data to reference positions.

    Python 5 7

  5. indra_world indra_world Public

    INDRA World Modelers services

    Jupyter Notebook 6 5

  6. indra_cogex indra_cogex Public

    INDRA Context Graph Extension

    Jupyter Notebook 7 9

Repositories

Showing 10 of 49 repositories
  • gilda Public

    Grounding of biomedical named entities with contextual disambiguation

    gyorilab/gilda’s past year of commit activity
    Python 37 BSD-2-Clause 11 8 3 Updated Jul 24, 2024
  • trialsynth Public

    TrialSynth interprets and integrates clinical trials data from multiple registries in a computable form

    gyorilab/trialsynth’s past year of commit activity
    Python 0 BSD-2-Clause 1 0 1 Updated Jul 23, 2024
  • mira Public

    MIRA modeling framework

    gyorilab/mira’s past year of commit activity
    Jupyter Notebook 9 BSD-2-Clause 7 11 4 Updated Jul 23, 2024
  • indra_cogex Public

    INDRA Context Graph Extension

    gyorilab/indra_cogex’s past year of commit activity
    Jupyter Notebook 7 BSD-2-Clause 9 17 6 Updated Jul 23, 2024
  • indra_gpt Public
    gyorilab/indra_gpt’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 23, 2024
  • indra_signor Public

    Connecting INDRA to the SIGNOR database curation workflow

    gyorilab/indra_signor’s past year of commit activity
    Python 0 0 0 0 Updated Jul 21, 2024
  • ui_util Public

    This repo creates general utilities for our user interfaces.

    gyorilab/ui_util’s past year of commit activity
    Python 0 4 0 1 Updated Jul 19, 2024
  • emmaa Public

    Ecosystem of Machine-maintained Models with Automated Analysis

    gyorilab/emmaa’s past year of commit activity
    Python 10 BSD-2-Clause 10 2 3 Updated Jul 19, 2024
  • indra_db Public

    A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own content and knowledge access. Our implementation of the database is the back-end to many of our projects, providing a vast and detailed knowledge base derived from many resources.

    gyorilab/indra_db’s past year of commit activity
    Python 16 GPL-3.0 10 7 3 Updated Jul 19, 2024
  • protmapper_paper Public

    Code to generate results and figures relevant to the ProtMapper manuscript.

    gyorilab/protmapper_paper’s past year of commit activity
    Python 1 1 0 0 Updated Jul 14, 2024
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