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Issues list

how are "dup" vs "ITD" defined by pavfinder
#21 by rhalperin was closed Aug 1, 2022
1
Add conda recipe enhancement
#20 by kmnip was closed Oct 7, 2022
@kmnip @readmanchiu
13
error in cmp_genome_coords: '<' not supported between instances of 'str' and 'int'
#18 by rhalperin was closed Jul 1, 2022
6
Error running tap2.py on example data: input file does not exist
#17 by rhalperin was closed Apr 15, 2022
3
FusionBloom KeyError - while running pavfinder
#16 by think-o was closed Jul 21, 2021
13
Fusion-bloom reporting "TypeError"
#15 by Rohanbha was closed Jul 21, 2021
2
Number of cpus used by pavfinder
#14 by af8 was closed Jan 18, 2021
5
Error running pavfinder on a large sample
#13 by af8 was closed Jan 18, 2021
5
FusionBloom - some cases generate error in minimap2 | samtools command
#12 by af8 was closed Jan 4, 2021
3
Output
#11 by yanlina0205 was closed Jan 5, 2021
2
AttributeError: 'NoneType' object has no attribute 'get_sequence'
#10 by yanlina0205 was closed Dec 11, 2020
13
Run PV to detect transcriptome structural variants question
#9 by yanlina0205 was closed Dec 11, 2020
3
filter_fasta script generates erroneous "transcripts.filtered.fa"
#8 by af8 was closed Jun 9, 2020
1
GTF problem with transcript_id record - KeyError: 'transcript_id'
#7 by af8 was closed Apr 1, 2020
1
Example output files?
#6 by stianlagstad was closed May 29, 2020
2
KeyError on transcript ID
#3 by mcmero was closed Oct 30, 2019
9
python 3 support
#2 by jplaverdure was closed Jun 9, 2020
@readmanchiu
2
biobloomcategorizer: invalid option -- 'a'
#1 by mcmero was closed Mar 25, 2019
@readmanchiu
7
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