This repository contains scripts and data for analysing the rhizobial microbiome using high-fidelity (HiFi) sequencing technologies. The project aims to investigate the diversity and function of rhizobia in various soil samples to understand their role in plant growth and soil health.

• Introduction
• Requirements
• Installation
• Usage
• License

This project uses HiFi sequencing technology to provide analysis of isolated rhizobial isolates from soil environments.

• Python 3.8 or higher. Biopython, matplotlib, pandas, seaborn
• snakmake
• Conda envs can be found in the envs folder, which are used for the snakemake method

1. Clone the repository:

   git clone https://github.com/bartongroup/PT_HiFi_rhizobial_assemblies.git  
   cd PT_HiFi_rhizobial_assemblies

snakemake --snakefile <name_of_file_to_run>

This project is licensed under the MIT License. See the LICENSE file for details.