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@bartongroup

Geoff Barton's Computational Biology Group

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  1. Proteus Proteus Public

    R package for analysing proteomics data

    R 45 3

  2. RATS RATS Public

    Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.

    R 32 1

  3. 2passtools 2passtools Public

    Two pass alignment for long reads

    Python 20 1

  4. AlmostSignificant AlmostSignificant Public

    A server for maintaining high-throughput sequencing QC data

    Python 13

  5. yanocomp yanocomp Public

    Yet another nanopore modification comparison tool

    Python 11 1

  6. profDGE48 profDGE48 Public

    Code base for profiling highly replicated differential gene expression RNA-seq.

    Perl 10 5

Repositories

Showing 10 of 63 repositories
  • ProIntVar Public

    The core bits of ProIntVar

    bartongroup/ProIntVar’s past year of commit activity
    Python 3 MIT 0 8 0 Updated Jul 25, 2024
  • Colabfold_batch_installer Public

    Automated colabfold installation for UoD HPC Cluster

    bartongroup/Colabfold_batch_installer’s past year of commit activity
    Shell 1 0 0 0 Updated Jul 25, 2024
  • slivka Public
    bartongroup/slivka’s past year of commit activity
    Python 7 Apache-2.0 3 27 (1 issue needs help) 1 Updated Jul 11, 2024
  • dexdash Public

    Interactive explorer for differential expression analysis centred on the volcano plot. Features fast functional enrichment.

    bartongroup/dexdash’s past year of commit activity
    R 2 0 0 0 Updated Jun 27, 2024
  • MG_NCCProt Public

    Nascent Chromatin Capture Proteomics (Alabert)

    bartongroup/MG_NCCProt’s past year of commit activity
    R 0 0 0 0 Updated Jun 25, 2024
  • MG_COVIDProt_neutrophils Public

    Large-scale proteomics of COVID neutrophils (Chalmers)

    bartongroup/MG_COVIDProt_neutrophils’s past year of commit activity
    R 0 0 0 0 Updated Jun 18, 2024
  • fenr Public

    Fast functional enrichment.

    bartongroup/fenr’s past year of commit activity
    R 0 0 0 0 Updated Jun 14, 2024
  • PT_HiFi_rhizobial_assemblies Public

    scripts to assemble PacBio HiFi data from rhizobial microbiome

    bartongroup/PT_HiFi_rhizobial_assemblies’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Jun 7, 2024
  • MG_ChromCom2 Public

    Chromatin compaction 2 (Tanaka)

    bartongroup/MG_ChromCom2’s past year of commit activity
    R 0 0 0 0 Updated May 22, 2024
  • covid19-ace2-variants Public

    Research code and data to interpret the effect of ACE2 variants on SARS-CoV-2 infection

    bartongroup/covid19-ace2-variants’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated May 2, 2024
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