Welcome to the AxonDeepSeg wiki! You will find here documentation, guidelines, tips and tricks about AxonDeepSeg. This documentation is aimed at current and/or future developers of the AxonDeepSeg repository.

• Installation for development
• Guidelines for contribution
• Rules for commits and issues labelling (git)
• How to test (validate) new model
• Using ADS on GPU Clusters

• Datasets
• Models

• How to create a new release
• How to update the documentation
• How to update axondeepseg wheel in PyPI
• How to manage the Binder link
• FSLeyes plugin
• Tag a new version of the package
• Crash report with Sentry

• Coding rules
• How to handle paths
• Visualizing and plotting data