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@axondeepseg

AxonDeepSeg

Segmentation software for microscopy data of nerve fibers based on deep learning.

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  1. axondeepseg axondeepseg Public

    Axon/Myelin segmentation using Deep Learning

    Python 113 32

Repositories

Showing 10 of 27 repositories
  • axondeepseg Public

    Axon/Myelin segmentation using Deep Learning

    axondeepseg/axondeepseg’s past year of commit activity
    Python 113 MIT 32 155 (11 issues need help) 7 Updated Jun 21, 2024
  • AxonDeepSynth Public Forked from icon-lab/SynDiff

    Official PyTorch implementation of SynDiff described in the paper (https://arxiv.org/abs/2207.08208).

    axondeepseg/AxonDeepSynth’s past year of commit activity
    Python 0 35 0 1 Updated Jun 16, 2024
  • model_seg_unmyelinated_tem Public

    Model for unmyelinated axon segmentation in TEM images, based on nnUNet

    axondeepseg/model_seg_unmyelinated_tem’s past year of commit activity
    Python 1 MIT 0 2 0 Updated May 31, 2024
  • seg_ci Public
    axondeepseg/seg_ci’s past year of commit activity
    Shell 0 0 0 0 Updated May 26, 2024
  • model-seg-human-brain-cars Public

    Axon and myelin segmentation model in histology images to quantify myelination in the human brain. Training data was acquired in the uncinate fasciculus using CARS microscopy.

    axondeepseg/model-seg-human-brain-cars’s past year of commit activity
    Python 0 MIT 0 0 0 Updated May 24, 2024
  • nn-axondeepseg Public

    1-class and 2-class segmentation of axon/myelin using nnunetv2

    axondeepseg/nn-axondeepseg’s past year of commit activity
    Python 1 0 5 0 Updated May 1, 2024
  • model_seg_generalist Public

    Axon and myelin segmentation model trained on all ADS datasets. Works across contrasts and resolutions.

    axondeepseg/model_seg_generalist’s past year of commit activity
    Python 0 0 2 0 Updated Apr 30, 2024
  • model_seg_nerve Public

    Nerve area segmentation for axon density estimation in BF images

    axondeepseg/model_seg_nerve’s past year of commit activity
    Python 0 0 0 0 Updated Apr 18, 2024
  • axondeepseg/awesome-histology-segmentation’s past year of commit activity
    1 CC0-1.0 0 1 0 Updated Apr 17, 2024
  • default-wakehealth-model Public

    AxonDeepSeg default Wakehealth model and testing image

    axondeepseg/default-wakehealth-model’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Apr 8, 2024

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