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Achievement: YOLOAchievement: Pull Sharkx2

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  • assembleBAC Public

    Groovy MIT License Updated Jul 19, 2024

  • assembleBAC-ONT Public

    This pipeline assembles ONT sequence data

    Nextflow 3 MIT License Updated Jul 3, 2024

  • bovisanalyzer Public

    nextflow pipeline for analyzing Mycobacterium bovis genomes

    Nextflow 8 2 MIT License Updated Feb 9, 2024

  • bacQC-ONT Public

    QC pipeline for ONT data

    Nextflow MIT License Updated Feb 1, 2024

  • bacQC Public

    Groovy 2 1 MIT License Updated Jan 31, 2024

  • Ghana_course Public

    Lua 2 Other Updated Jan 27, 2023

  • runBakta Public

    nextflow pipeline for running bakta on assemblies

    Groovy 1 Updated Dec 2, 2022

  • modules Public

    Forked from nf-core/modules

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    Nextflow MIT License Updated Nov 15, 2021

  • test-datasets Public

    Forked from nf-core/test-datasets

    Test data to be used for automated testing with the nf-core pipelines

    MIT License Updated Oct 28, 2021

  • itol_generator Public

    Python 2 Updated Aug 9, 2021

  • RBCT Public

    R GNU General Public License v3.0 Updated May 24, 2021

  • bactmap Public

    Forked from nf-core/bactmap

    WIP: A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

    Nextflow MIT License Updated May 7, 2021

  • multi-package-containers Public

    Forked from BioContainers/multi-package-containers

    Testing building mulled containers for multi-requirement tools.

    Updated Apr 7, 2021

  • Ethiopia2020 Public

    R Updated Nov 16, 2020

  • seqSerotyper Public

    seqSerotyper is a tool for assigning serotypes to pneumococcal whole genome sequences

    Perl 3 Updated Aug 21, 2020

  • run_kraken Public

    Python Updated Aug 21, 2020

  • Brazil2020 Public

    R Updated Jul 31, 2020

  • augur Public

    Forked from nextstrain/augur

    Pipeline components for real-time virus analysis

    Python GNU Affero General Public License v3.0 Updated Jun 17, 2019

  • docker_images Public

    Updated Jun 10, 2019

  • genomeQCeR Public

    Updated Jun 4, 2018