Skip to content
This repository has been archived by the owner on Nov 17, 2023. It is now read-only.

Fixing a symlink issue with R install #13708

Merged
merged 1 commit into from
Jan 10, 2019
Merged

Conversation

lupesko
Copy link
Contributor

@lupesko lupesko commented Dec 21, 2018

Description

Fixing a symlink issue with R install, which prevents the R install instructions from working as expected.
Verified that the fix is working.

@lupesko lupesko requested a review from szha as a code owner December 21, 2018 01:58
@lupesko
Copy link
Contributor Author

lupesko commented Dec 21, 2018

@ankkhedia @anirudhacharya - please take a look.

@lupesko
Copy link
Contributor Author

lupesko commented Dec 21, 2018

@aaronmarkham you may want to merge this one...

@@ -703,7 +703,7 @@ brew install [email protected]
Add a soft link to the OpenBLAS installation. This example links the 0.3.1 version:

```bash
ln -sf /usr/local/opt/openblas/lib/libopenblasp-r0.3.* /usr/local/opt/openblas/lib/libopenblasp-r0.3.1.dylib
ln -sf /usr/local/opt/openblas/lib/libopenblasp-r0.3.*.dylib /usr/local/opt/openblas/lib/libopenblasp-r0.3.1.dylib
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

@ankkhedia @anirudhacharya why [email protected]? there are bug fixes/performance improvements post this version https://github.com/xianyi/OpenBLAS/releases

Usually you create symlink without the version to a specific version something like this. if there are multiple 0.3* version, the command fails

ln -sf /usr/local/opt/openblas/lib/libopenblasp-r0.3.1.dylib /usr/local/opt/openblas/lib/libopenblasp.dylib
``

Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

it picks up the BLAS version from the machine where the R-package was built. We explored not hard-linking to a particular BLAS version, but that is not trivial. Will revisit it again. Either ways, this PR need not be blocked because of that right?

@Roshrini
Copy link
Member

@mxnet-label-bot Add [R, pr-awaiting-response]

@marcoabreu marcoabreu added pr-awaiting-response PR is reviewed and waiting for contributor to respond R labels Dec 21, 2018
@sandeep-krishnamurthy
Copy link
Contributor

@ankkhedia @anirudhacharya - can you please take a look at Naveen's comment?

@aaronmarkham
Copy link
Contributor

@aaronmarkham you may want to merge this one...

@lupesko Can you check the response regarding targeting a specific version? LMK if that's resolved or not.

@lupesko
Copy link
Contributor Author

lupesko commented Jan 7, 2019

Had a discussion with @nswamy and @anirudhacharya and we agreed to update it so that user installs the latest openblas and we symbolically link it with whatever version they have. PR update to follow.

@aaronmarkham
Copy link
Contributor

@lupesko is this ready to ship?

Copy link
Contributor

@ankkhedia ankkhedia left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

LGTM
@nswamy It seems that your concerns have been addressed

@aaronmarkham aaronmarkham merged commit 9440962 into apache:master Jan 10, 2019
zhaoyao73 added a commit to zhaoyao73/incubator-mxnet that referenced this pull request Jan 11, 2019
* upstream/master: (109 commits)
  Code modification for  testcases of various network models in directory example (apache#12498)
  [CI] Prevent timeouts when rebuilding containers with docker. (apache#13818)
  fix Makefile for rpkg (apache#13590)
  change to compile time (apache#13835)
  Disabled flaky test (apache#13758)
  Improve license_header tool by only traversing files under revision c… (apache#13803)
  Removes unneeded nvidia driver ppa installation (apache#13814)
  Add Local test stage and option to jump directly to menu item from commandline (apache#13809)
  Remove MXNET_STORAGE_FALLBACK_LOG_VERBOSE from test_autograd.py (apache#13830)
  Fix scala doc build break for v1.3.1 (apache#13820)
  [MXNET-1263] Unit Tests for Java Predictor and Object Detector APIs (apache#13794)
  [MXNET-1260] Float64 DType computation support in Scala/Java (apache#13678)
  onnx export ops (apache#13821)
  [MXNET-880] ONNX export: Random uniform, Random normal, MaxRoiPool (apache#13676)
  fix minor indentation (apache#13827)
  Fixing a symlink issue with R install (apache#13708)
  remove useless code (apache#13777)
  ONNX ops: norm exported and lpnormalization imported (apache#13806)
  Add new Maven build for Scala package (apache#13819)
  Dockerfiles for Publish Testing (apache#13707)
  ...
haohuanw pushed a commit to haohuanw/incubator-mxnet that referenced this pull request Jun 23, 2019
Sign up for free to subscribe to this conversation on GitHub. Already have an account? Sign in.
Labels
pr-awaiting-response PR is reviewed and waiting for contributor to respond R
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

8 participants