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Nexflow pipeline for viral metagenomics analyses

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main.nf		main.nf
nextflow.config		nextflow.config

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nf-metavir

Nexflow pipeline for assembly and taxonomic classification of (viral) Illumina metagenomics data.

Tools used:

fastp for quality control
Bowtie2 for optional host mapping
Megahit / Metaspades for assembly
Kraken2 / Diamond for taxonomic classification

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Nexflow pipeline for viral metagenomics analyses

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