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Showing results

just get your chrom sizes

Rust 6 Updated Aug 16, 2024

Genome assembly metadata

Python 2 1 Updated Aug 12, 2024

LLM101n: Let's build a Storyteller

27,295 1,493 Updated Aug 1, 2024

My solution to Bioinformatics Specialization (Finding Hidden Messages in DNA; Genome Sequencing; Comparing Genes, Proteins, and Genomes; Molecular Evolution; Genomic Data Science and Clustering; Fi…

Python 79 48 Updated Nov 1, 2018

Read specialized NGS formats as data frames in R, Python, and more.

Rust 58 8 Updated Jun 30, 2024

A very fast interval tree data structure

Rust 110 7 Updated May 30, 2024

☄🌌️ The minimal, blazing-fast, and infinitely customizable prompt for any shell!

Rust 43,928 1,910 Updated Aug 26, 2024

fastest GTF/GFF-to-BED converter chilling around

Rust 16 Updated Mar 27, 2024

Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)

Rust 57 18 Updated Jan 28, 2023

The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/

CSS 81 33 Updated Apr 5, 2022

An open-access bioinformatics text

Jupyter Notebook 82 26 Updated Jul 24, 2024

Applied Computational Genomics Course at UU: Spring 2020

HTML 935 205 Updated Apr 5, 2024

A high-performance exon/CDS spliced transcriptome builder from fasta + GTF/GFF

Rust 2 Updated Dec 29, 2023

GTF/GFF per gene non-overlapping exon length calculator

Rust 4 Updated Jan 2, 2024

The post-TOGA processing pipeline

Python 4 2 Updated Jul 25, 2024

cool BED-to-GFF3 converter that runs in parallel

Rust 8 1 Updated Apr 13, 2024

This is the Rust course used by the Android team at Google. It provides you the material to quickly teach Rust.

Rust 27,308 1,615 Updated Aug 27, 2024

a lexicographically-based GTF/GFF sorter

Rust 28 2 Updated Aug 19, 2024

high-performance BED-to-GTF converter written in Rust

Rust 12 Updated Apr 13, 2024

Rust explained using easy English

Shell 8,040 376 Updated May 13, 2024

🦀 Small exercises to get you used to reading and writing Rust code!

Rust 52,292 9,988 Updated Aug 26, 2024

Workshops presented by the Gladstone Bioinformatics Core

HTML 179 62 Updated Aug 22, 2024

Collection of bioinformatics training materials

Python 956 182 Updated Aug 19, 2024

A continually expanding collection of RNA-seq tools

38 14 Updated Jul 31, 2024

A guide to learn bash

11,746 1,018 Updated Aug 11, 2024

COMP 364: Computer Tools for Life Science

Jupyter Notebook 2 Updated Jul 19, 2020

🔬 Path to a free self-taught education in Bioinformatics!

5,310 891 Updated Apr 8, 2024

📊 Path to a free self-taught education in Data Science!

32 15 Updated Sep 30, 2020

Unix, R and python tools for genomics and data science

Shell 1,142 344 Updated Jul 22, 2024