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gtfsort Public
a lexicographically-based GTF/GFF sorter
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedAug 19, 2024 -
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assemblyinfo Public
Forked from open2c/assemblyinfoGenome assembly metadata
Python MIT License UpdatedAug 12, 2024 -
postoga Public
The post-TOGA processing pipeline
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oxbow Public
Forked from abdenlab/oxbowRead specialized NGS formats as data frames in R, Python, and more.
Rust Apache License 2.0 UpdatedJun 30, 2024 -
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chaintools Public
Serialize and work with .chain files in Rust
Rust MIT License UpdatedMay 15, 2024 -
bed2gff Public
cool BED-to-GFF3 converter that runs in parallel
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bed2gtf Public
high-performance BED-to-GTF converter written in Rust
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gxf2bed Public
fastest GTF/GFF-to-BED converter chilling around
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thermut Public
Data processing and pipeline for "The role of the thermodynamic pressure in Lensky's long-term evolution experiment"
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modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedJan 31, 2024 -
noel Public
GTF/GFF per gene non-overlapping exon length calculator
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to-trans Public
A high-performance exon/CDS spliced transcriptome builder from fasta + GTF/GFF
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PA-virdiscovery-pipeline Public
A custom viral discovery pipeline from avian-virus samples for the PA lab
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TOGA Public
Forked from hillerlab/TOGATOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact o…
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