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  • Erasmus Medical Center
  • Rotterdam, NL
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Starred repositories

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Container to WASM converter

C++ 1,920 68 Updated Jul 19, 2024

Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.

R 72 55 Updated Apr 29, 2024

[Under development] An R package with functionality to help fit large models on data in the CDM

R 3 2 Updated Jun 18, 2024

[Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)

Python 10 2 Updated Jun 18, 2024

Dynamic visualization of Electronic Health Record data in the OMOP framework

R 26 13 Updated May 28, 2021

R package to easily interface with OMOP-formatted EHR data.

R 35 7 Updated Mar 4, 2020

GNU R package that allows package authors to cache data files in user directories.

R 7 Updated Feb 2, 2024

reimplementation of OHDSI's Circe JSON->SQL compiler

Julia 7 1 Updated Jul 8, 2024

Chemotherapy Regimen Detection from EHRs

R 4 3 Updated May 27, 2024

Health equity research assessment (HERA) - a large scale characterization of gender and racial disparities

R 9 2 Updated Jul 6, 2023

R package for finding patients in SQL databases using formulas and without using SQL joins

R 5 1 Updated Mar 14, 2023

Create cohorts from databases utilizing the OMOP CDM

Julia 9 7 Updated Jul 3, 2024

The statistical language R compiled to WebAssembly via Emscripten, for use in web browsers and Node.

TypeScript 811 54 Updated Jul 18, 2024

A dashboard for OMOP2OBO mappings

R 4 1 Updated Oct 10, 2022

Exports the data from the OMOP-CDM that is necessary for the EHDEN Database Catalogue

R 8 6 Updated Jun 30, 2023

Bayesian sparse regression with regularized shrinkage and conjugate gradient acceleration

Jupyter Notebook 18 7 Updated Jan 20, 2024

Train pharmacodynamic deep generative models to model disease progression

Jupyter Notebook 8 1 Updated Feb 7, 2022

Quality assurance of vaccine mappings of OMOP vocabulary

Python 1 1 Updated Dec 6, 2021

The goal of gsdmvn is to enable group sequential trial design for time-to-event endpoints under non-proportional hazards assumptions.

R 3 5 Updated Jun 14, 2023

A general-purpose probabilistic programming system with programmable inference

Julia 1,792 160 Updated Jul 12, 2024

DuckDB is an analytical in-process SQL database management system

C++ 20,989 1,694 Updated Jul 19, 2024

Statistical Rethinking course winter 2022

R 4,107 443 Updated Mar 15, 2022

Synthetic data generation for tabular data

Python 2,225 293 Updated Jul 19, 2024

A collection of visual guides to help applied scientists learn causal inference.

228 20 Updated Sep 12, 2022

⛏️ A refinement proof framework for haskell

Haskell 69 2 Updated May 8, 2023

Vaccine Ontology

Makefile 15 9 Updated Jul 16, 2024

A methodology study into the stability of prediction models across target cohort and outcome phenotypes

R 1 1 Updated May 7, 2021

An R package for instantiating cohorts using data in the CDM.

R 11 10 Updated Jul 14, 2024

R package reverse dependency checking

R 99 31 Updated May 22, 2024
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