Genome annotation with AUGUSTUS

A tool for drawing ANI clustermap between all-vs-all microbial genomes

A genome visualization python package for comparative genomics

Application and Python module for average nucleotide identity analyses of microbes.

A catalogue of available long read sequencing data analysis tools

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

⚡ ♒ Rapid prokaryotic genome annotation

Make Picrust2 Output Analysis and Visualization Easier

NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.

Download files from NCBI Entrez by accession

Phylogenomic analyses and distribution of terpene synthases among Streptomyces

R package, using vis.js library for network visualization

Tutorial about R package PopGenome

Cyberduck is a libre FTP, SFTP, WebDAV, Amazon S3, Backblaze B2, Microsoft Azure & OneDrive and OpenStack Swift file transfer client for Mac and Windows.

Plotting tool for HMMER3 hmm files based on TikZ

Scripts and data to go along with introductions to R

Posit Cheat Sheets - Can also be found at https://posit.co/resources/cheatsheets/.

RStudio hex stickers

Pokemon themed R package

Accelerated BLAST compatible local sequence aligner.

CGView is a Java package for generating high-quality, zoomable maps of circular genomes.

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.

Shiny app for exploring a PCA

Fast genome and metagenome distance estimation using MinHash

the pangenome graph builder

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

SPAdes Genome Assembler

Fast Whole-Genome Similarity (ANI) Estimation