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University of Virginia (UVA) Medicine
- Charlottesville, VA
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01:25
(UTC -04:00) - https://www.linkedin.com/in/YogiOnBioinformatics/
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skills-code-with-codespaces Public
An exercise in using GitHub's Codespaces
Shell MIT License UpdatedJul 31, 2024 -
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Handwritten work & R code related to University of Virginia's MATH 3350 ( Applied Linear Algebra)
R UpdatedDec 17, 2023 -
resource-files Public
Common resource files necessary for Computational Biology research.
Python UpdatedSep 19, 2023 -
dotfiles Public
Dotfiles + config files that I use in my personal and professional work.
Shell UpdatedMay 11, 2023 -
Six-Degrees-of-Hollywood Public
Web game inspired by Six Degrees of Kevin Bacon, a game based on the theory of six degrees of separation. The idea of six degrees of separation suggests that any given person is only six or fewer s…
HTML UpdatedMay 1, 2023 -
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B-Cells-In-Atherosclerosis Public
Work done during rotation with Coleen McNamara & Stefan Bekiranov in UVA BIMS PhD program
Jupyter Notebook UpdatedFeb 15, 2023 -
Work done during rotation with Ani Manichaikul during UVA PhD program
Jupyter Notebook UpdatedJan 19, 2023 -
Statistical analysis on Mutation Annotation Format files from Whole-Exome Sequencing of Tumor samples and Controls.
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Determining reproducibility of Epigenomic signal for Answer ALS
Jupyter Notebook UpdatedOct 23, 2022 -
Integration of ATAC-Seq and multi-assay ChIP-Seq data using IDEAS (Hidden Markov Model) approach.Multi-Epigenomic state annotation with CHDI NeuroLINCS Epigenomics data using the tool "IDEAS"
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Research project undertaken in Computational Genomics at the University of Pittsburgh. with Dr. Miler Lee and students to understand Maternal-to-Zygotic transition in Xenopus laevis
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Ordinal Logistic Regression with ElasticNet Regularization using Multi-Assay Epigenomics Data from CHDI NeuroLINCS Consortium.
bioinformatics regression computational-biology elasticnet ordinal-regression epigenomics regularized-logistic-regressionJupyter Notebook UpdatedMay 13, 2022 -
Joint-Genotyping-2021-2022 Public
Joint Genotyping in MIT Fraenkel Lab with ALS Genomics + 1000 Genomes Data
bioinformatics computational-biology high-performance-computing omics wgs whole-genome-sequencing genotypingJupyter Notebook UpdatedMay 10, 2022 -
Validating the first human iPSC-derived Cortical Neuron ALS model via systematic Epigenomic analysis.
UpdatedApr 19, 2022 -
A repository containing examples of Data Structure Implementations that I did during my University of Pittsburgh course CS445: Data Structures-Abstractions and Implementations
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Description of work done at Merck pharmaceutical company in the summer of 2018 as a Computational Drug Discovery Intern at West Point, PA. Information excludes all proprietary information belonging…
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Differential-Gene-Expression-Analysis-with-Machine-Learning-Using-Dexamethasone-Treatment-Data Public
Worked with fellow peers at University of Pittsburgh under supervision of Dr. Junshu Bao, Department of Statistics, University of Pittsburgh, to do a Differential Gene Expression Analysis on a Dexa…
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YogiOnBioinformatics Public
Get to know more about YogiOnBioinformatics (Yogindra Raghav), Bioinformatics scientist at MIT and the Broad Institute of MIT and Harvard.
1 UpdatedDec 5, 2020 -
Independent project I undertook to perform a full ChIP-Seq analysis of the transcription factor Nanog in Zebrafish embryos.
UpdatedAug 10, 2020 -
Published work of mine in Pitt Biological Sciences Advising Blog about using Bioinformatics to predict Ligand-Protein interactions.
UpdatedAug 2, 2020 -
ProteinVR Public
Protein Virtual Reality is a University of Pittsburgh project with Dr. Jacob D. Durrant that is the world's first anatomical and protein visualization VR program tailored for collegiate-biology cou…
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Destruction of Aqueous Microfibers Enzymatically (DAME): A novel Synthetic Biology systems approach to destroying Polyester-based Microplastic fibers
GNU General Public License v3.0 UpdatedJul 29, 2020 -
Synthetic-Biology Public
Presentations and work done for University of Pittsburgh course, Synthetic Biology.
2 UpdatedJul 29, 2020 -
BLAST-Biopython-Challenge Public
Challenge to efficiently BLAST files (FASTA file & quality scores) and report key metrics about FASTA back to user.
Python GNU General Public License v3.0 UpdatedJun 18, 2020 -
Links to other repositories containing all the work I did as a Computational Biology Research Assistant in the Dr. Jacob D. Durrant Lab of Computational Drug Discovery, University of Pittsburgh.
UpdatedMar 21, 2019 -
Workshops, Course Schedule and Teaching Assistant Review from my time as a chosen Undergraduate Teaching Assistant for the University of Pittsburgh course, BIOSC1540 - Computational Genomics taught…
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Course schedule from experience as a selected Undergraduate Teaching Assistant at the University of Pittsburgh course, BIOSC 1540 - Computational Structural Biology, taught by Dr. Jacob Durrant.
python bash machine-learning university protein-structure jupyter-notebook molecular-dynamics-simulationPython UpdatedMar 18, 2019 -
Project in the Durrant Lab at UPitt that wanted to re-use code from a previous neural network ligand-protein interaction software to extract features for ML
Python UpdatedMar 15, 2019