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Tutorial release, new features, and bug fix #75

Merged
merged 23 commits into from
Apr 28, 2023
Merged

Tutorial release, new features, and bug fix #75

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5325d25
fix: add missing https:// in the issue-template config file;
WenjieDu Apr 22, 2023
44335be
Add unit-test cases for `pypots-cli` (#72)
WenjieDu Apr 23, 2023
d84e595
fix: only report coverage if file .coverage exists;
WenjieDu Apr 23, 2023
a54cea3
Merge branch 'main' into dev
WenjieDu Apr 23, 2023
07128b4
fix: remove cli-testing case of show-coverage to avoid mis-calculation;
WenjieDu Apr 23, 2023
dd6b793
fix: must not delete .coverage file after testing;
WenjieDu Apr 23, 2023
568b3c5
Fix bugs in the code-coverage report (#73)
WenjieDu Apr 23, 2023
f330f85
feat: default disabling early-stopping mechanism during model training;
WenjieDu Apr 24, 2023
c27f22c
fix: return correct val_X and test_X in gene_physionet2012() when art…
WenjieDu Apr 24, 2023
ea04dd6
feat: add pypots.random.set_random_seed();
WenjieDu Apr 24, 2023
0787260
feat: enable `return_labels` in Dataset classes;
WenjieDu Apr 24, 2023
895f9bc
refactor: remove autoflake that is not quite useful;
WenjieDu Apr 25, 2023
504bdd0
feat: enable automatically saving model into file if necessary;
WenjieDu Apr 25, 2023
e2485de
fix: remove typing.Literal which is not supported in python 3.7;
WenjieDu Apr 25, 2023
922bbfb
fix: the disordered labels in the returned data;
WenjieDu Apr 25, 2023
c7b6e26
fix: mistaken logical code in auto_save_model_if_necessary;
WenjieDu Apr 25, 2023
ea560d4
Add devcontainer config (#76)
WenjieDu Apr 27, 2023
4df32de
fix: set return_labels=False for training Dataset for CRLI and VaDER;
WenjieDu Apr 27, 2023
baab39e
feat: add git stale config file;
WenjieDu Apr 27, 2023
cce28bd
doc: remove tutorials dir, will create a new repo to put all tutorials;
WenjieDu Apr 27, 2023
4b25fb6
fix: remove tutorials from checking;
WenjieDu Apr 27, 2023
1f42c77
feat: add jupyterlab as a dev dependency, update README;
WenjieDu Apr 27, 2023
39b2bbe
doc: update README to add the link of BrewedPOTS;
WenjieDu Apr 28, 2023
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fix: set return_labels=False for training Dataset for CRLI and VaDER;
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@WenjieDu
WenjieDu committed Apr 27, 2023
commit 4df32de0bf8f7867a172fc7078ce1f1630326eef
4 changes: 3 additions & 1 deletion pypots/clustering/crli.py
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Original file line number Diff line number Diff line change
Expand Up @@ -583,7 +583,9 @@ def fit(

"""
# Step 1: wrap the input data with classes Dataset and DataLoader
training_set = DatasetForGRUD(train_set, file_type=file_type)
training_set = DatasetForGRUD(
train_set, return_labels=False, file_type=file_type
)
training_loader = DataLoader(
training_set,
batch_size=self.batch_size,
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4 changes: 3 additions & 1 deletion pypots/clustering/vader.py
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Original file line number Diff line number Diff line change
Expand Up @@ -670,7 +670,9 @@ def fit(
Trained classifier.
"""
# Step 1: wrap the input data with classes Dataset and DataLoader
training_set = DatasetForGRUD(train_set, file_type=file_type)
training_set = DatasetForGRUD(
train_set, return_labels=False, file_type=file_type
)
training_loader = DataLoader(
training_set,
batch_size=self.batch_size,
Expand Down