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Tutorial release, new features, and bug fix #75

Merged
merged 23 commits into from
Apr 28, 2023
Merged

Tutorial release, new features, and bug fix #75

merged 23 commits into from
Apr 28, 2023

Commits on Apr 22, 2023

  1. fix: add missing https:// in the issue-template config file;

    @WenjieDu
    WenjieDu committed Apr 22, 2023
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Commits on Apr 23, 2023

  1. Add unit-test cases for pypots-cli (#72) 

    * refactor: move `pypots-cli` from pypots/utils/commands to pypots/cli;

* feat: add test cases for pypots-cli;

* feat: add test_cli.py into the execution of workflow CI;

* fix: raise RuntimeError when enable strict mode in check_if_under_root_dir();

* feat: update environment_for_conda_test.yml;

* fix: only run installation command again if necessary;

* fix: implement time out with threading;

* fix: directly set SPHINX_APIDOC_OPTIONS with os.environ to avoid bugs on Windows platform;

* fix: append "+cpu" if torch is not cuda version;

* fix: log and ignore error raised when testing on Windows;
    @WenjieDu
    WenjieDu committed Apr 23, 2023
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  2. fix: only report coverage if file .coverage exists;

    @WenjieDu
    WenjieDu committed Apr 23, 2023
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  3. Merge branch 'main' into dev

    @WenjieDu
    WenjieDu committed Apr 23, 2023
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  4. fix: remove cli-testing case of show-coverage to avoid mis-calculation;

    @WenjieDu
    WenjieDu committed Apr 23, 2023
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  5. fix: must not delete .coverage file after testing;

    @WenjieDu
    WenjieDu committed Apr 23, 2023
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  6. Fix bugs in the code-coverage report (#73) 

    * fix: disable testing on pypots-cli to see if `IndexError: list index out of range` in coverage report generation still exist;

* fix: re-enable testing on pypots-cli but disable TestPyPOTSCLIDev.test_1_run_tests();

* fix: disable the entire TestPyPOTSCLIDev;

* fix: disable the test case for --lint-code;
    @WenjieDu
    WenjieDu committed Apr 23, 2023
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Commits on Apr 24, 2023

  1. feat: default disabling early-stopping mechanism during model training;

    @WenjieDu
    WenjieDu committed Apr 24, 2023
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  2. fix: return correct val_X and test_X in gene_physionet2012() when art… 

    …ificially_missing is True;
    @WenjieDu
    WenjieDu committed Apr 24, 2023
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  3. feat: add pypots.random.set_random_seed();

    @WenjieDu
    WenjieDu committed Apr 24, 2023
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  4. feat: enable return_labels in Dataset classes;

    @WenjieDu
    WenjieDu committed Apr 24, 2023
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Commits on Apr 25, 2023

  1. refactor: remove autoflake that is not quite useful;

    @WenjieDu
    WenjieDu committed Apr 25, 2023
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  2. feat: enable automatically saving model into file if necessary;

    @WenjieDu
    WenjieDu committed Apr 25, 2023
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  3. fix: remove typing.Literal which is not supported in python 3.7;

    @WenjieDu
    WenjieDu committed Apr 25, 2023
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  4. fix: the disordered labels in the returned data;

    @WenjieDu
    WenjieDu committed Apr 25, 2023
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  5. fix: mistaken logical code in auto_save_model_if_necessary;

    @WenjieDu
    WenjieDu committed Apr 25, 2023
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Commits on Apr 27, 2023

  1. Add devcontainer config (#76) 

    * feat: add the config file devcontainer.json for GitHub codebase creating;

* feat: update devcontainer.json;

* feat: remove the installation of cudnn;

* doc: add comments for postCreateCommand;
    @WenjieDu
    WenjieDu committed Apr 27, 2023
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  2. fix: set return_labels=False for training Dataset for CRLI and VaDER;

    @WenjieDu
    WenjieDu committed Apr 27, 2023
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  3. feat: add git stale config file;

    @WenjieDu
    WenjieDu committed Apr 27, 2023
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  4. doc: remove tutorials dir, will create a new repo to put all tutorials;

    @WenjieDu
    WenjieDu committed Apr 27, 2023
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  5. fix: remove tutorials from checking;

    @WenjieDu
    WenjieDu committed Apr 27, 2023
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  6. feat: add jupyterlab as a dev dependency, update README;

    @WenjieDu
    WenjieDu committed Apr 27, 2023
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Commits on Apr 28, 2023

  1. doc: update README to add the link of BrewedPOTS;

    @WenjieDu
    WenjieDu committed Apr 28, 2023
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