Add RRMS support #170
Workflow file for this run
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| # This workflow will build and test LongReadSum | |
| name: build tests | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| build-and-test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Download assets | |
| uses: dsaltares/[email protected] | |
| with: | |
| repo: 'WGLab/LongReadSum' | |
| version: 'tags/v0.1.0' | |
| file: 'SampleData.zip' | |
| - name: Unzip assets | |
| shell: bash --login {0} | |
| run: unzip SampleData.zip | |
| - name: Set up conda environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: longreadsum | |
| environment-file: environment.yml | |
| python-version: 3.9 | |
| auto-activate-base: false | |
| - name: Build LongReadSum | |
| shell: bash --login {0} # --login enables PATH variable access | |
| run: | | |
| make | |
| - name: Run tests | |
| shell: bash --login {0} | |
| run: | | |
| mkdir output # Unit test output folder | |
| python -m pytest |