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Materials for short, half-day workshops

Jupyter Notebook 298 137 Updated Aug 20, 2024

All code for the paper

R 1 Updated Jun 20, 2020

Sample selection for exome sequencing based on dmp/IMPACT sequencing metrics

R 1 1 Updated Mar 9, 2019

utilities to make waterfall plots of mutation signature data

Python 3 2 Updated Jun 21, 2019

Annotates variants in MAF with OncoKB annotation.

Python 120 59 Updated Jun 18, 2024

10x Genomics Linked-Read Diploid De Novo Assembler

C++ 64 26 Updated Dec 6, 2018
Python 2 Updated Jul 13, 2020

Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis

Python 15 8 Updated Jul 11, 2024

Utility functions for FACETS

R 33 25 Updated Mar 22, 2024

neoantigen prediction from WES/WGS

Python 4 1 Updated Jan 22, 2021

Load, review and adjust facets fits

R 8 3 Updated Dec 30, 2021