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@mskcc

Memorial Sloan Kettering

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  1. vcf2maf vcf2maf Public

    Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

    Perl 365 215

  2. facets facets Public

    Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

    R 135 65

  3. ngs-filters ngs-filters Public

    Filters for false-positive mutation calls in NGS

    R 30 21

  4. iCallSV iCallSV Public

    Forked from rhshah/iCallSV

    A Framework to call Structural Variants from NGS based datasets

    Python 3 1

  5. mutation-signatures mutation-signatures Public

    Create mutation signatures from MAF's, and decompose them into Stratton signatures

    R 59 30

Repositories

Showing 10 of 221 repositories
  • igo-genomics Public
    mskcc/igo-genomics’s past year of commit activity
    Vue 1 0 3 0 Updated Aug 27, 2024
  • beagle_cli Public

    Beagle API Command Line Utility

    mskcc/beagle_cli’s past year of commit activity
    Python 0 1 8 3 Updated Aug 27, 2024
  • smile-dashboard Public
    mskcc/smile-dashboard’s past year of commit activity
    TypeScript 0 AGPL-3.0 7 0 4 Updated Aug 27, 2024
  • process_fastq Public

    This package will help process, merge and link fastq in user specified directory from manifest file

    mskcc/process_fastq’s past year of commit activity
    Python 0 0 0 16 Updated Aug 27, 2024
  • igo-sample-submission-node Public

    Sample Submission API written in node.js

    mskcc/igo-sample-submission-node’s past year of commit activity
    JavaScript 0 1 1 (1 issue needs help) 31 Updated Aug 26, 2024
  • igo-lims-plugins Public

    Sapio LIMS customizations to workflows for IGO

    mskcc/igo-lims-plugins’s past year of commit activity
    Java 2 0 0 7 Updated Aug 25, 2024
  • igo-demux Public

    Demultiplex Illumina sequencer output via DRAGEN, create fastq files and launch pipelines

    mskcc/igo-demux’s past year of commit activity
    Python 6 Apache-2.0 0 4 0 Updated Aug 25, 2024
  • vepcheck Public

    Nextflow pipeline to check different vep version

    mskcc/vepcheck’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Aug 23, 2024
  • DeepSig Public

    Single-Base Substitution Mutational Signature Inference for WES and MSK-IMPACT

    mskcc/DeepSig’s past year of commit activity
    HTML 1 0 0 0 Updated Aug 22, 2024
  • mimsi Public

    Microsatellite Instability Classification using Multiple Instance Learning

    mskcc/mimsi’s past year of commit activity
    Python 19 GPL-3.0 5 0 1 Updated Aug 22, 2024
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