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Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
Perl 364 215
Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
R 134 65
Filters for false-positive mutation calls in NGS
R 30 21
Forked from rhshah/iCallSV
A Framework to call Structural Variants from NGS based datasets
Python 3 1
Create mutation signatures from MAF's, and decompose them into Stratton signatures
R 59 30
Facets Preview Docker implementation for local use.
Toil API
Voyager Backend
Pipeline to Analyze ecDNA in collaboration with BoundlessBio
the restful service used by the IGO LIMS
CCS research pipeline to process WES and WGS TN pairs
SMILE messaging service for handling CMO label generation
Sapio LIMS customizations to workflows for IGO
Workflow for handling CNV events
CMO MetaDB Request Filter app
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