Stars
A Euclidean diffusion model for structure-based drug design.
TensorDict is a pytorch dedicated tensor container.
A minimal example for training a flow matching model in a pretrained VAE's latent space to generate MNIST digits.
llama3 implementation one matrix multiplication at a time
Protein-ligand structure prediction
The gzip classification method implemented for molecule classification.
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
Compressing protein structures effectively with torsion angles
Graph-based molecule modeling toolkit for cheminformatics
Scrapy, a fast high-level web crawling & scraping framework for Python.
Plug in and Play Implementation of Tree of Thoughts: Deliberate Problem Solving with Large Language Models that Elevates Model Reasoning by atleast 70%
Molecular dynamics simulations with an LLM agent
List of papers about Proteins Design using Deep Learning
Making Protein Design accessible to all via Google Colab!
Diffusion models of protein structure; trigonometry and attention are all you need!
🤖 Python examples of popular machine learning algorithms with interactive Jupyter demos and math being explained
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
Notes and links from the book club meetings
A curated list of delightful Bash scripts and resources.