This is a patch release that fixes how the correlation matrix plot is generated when users select only one atlas for parcellation.

What's Changed

🐛 Bug Fixes

• Fix ConnectPlot by @tsalo in #1188

Other Changes

• Refactor CIFTI parcellation and connectivity workflows to use wb_command by @tsalo in #1174
• Replace internal smoothing spheres with ones from TemplateFlow by @tsalo in #1160

Full Changelog: 0.7.4...0.7.5

This is a patch release that fixes two important bugs. The two bugs are: (1) band-pass filter values were not respected in versions 0.7.1 - 0.7.3 (they were hardcoded to 0.01 - 0.1) and (2) when processing CIFTI files, parcellated ReHo values in TSVs were not correct, due to a problem with how we were reconstructing CIFTI ReHo files. The dense CIFTI files should still be useable though.

What's Changed

🎉 Exciting New Features

• Make ConnectPlot robust to chosen atlases by @tsalo in #1161

🐛 Bug Fixes

• Fix band-pass filter settings in Config by @tsalo in #1172
• Allow ALFF to work with low-pass or high-pass filters by @tsalo in #1176
• Use CiftiCreateDenseFromTemplate for CIFTI ReHo by @tsalo in #1175

Other Changes

• Use nireports for HTML report generation by @tsalo in #1169

Full Changelog: 0.7.3...0.7.4

Small patch release for manuscript's executive summary.

What's Changed

🐛 Bug Fixes

• Drop concatenated rest-as-run section from executive summary by @tsalo in #1156

Full Changelog: 0.7.2...0.7.3

This is a patch release fixing small bugs in 0.7.1.

What's Changed

🎉 Exciting New Features

• Make GeneratedBy in preprocessing derivatives' dataset_description.json optional by @tsalo in #1151

🐛 Bug Fixes

• Fix exit code bug in cli.run.main() by @tsalo in #1152

Other Changes

• Replace pkgrf with load_data by @tsalo in #1147
• Update to new build image (v0.0.12) by @tsalo in #1153

Full Changelog: 0.7.1...0.7.2

This release prepares for the XCP-D manuscript.

What's Changed

🛠 Breaking Changes

• Change default --min-time from 100 to 240 by @tsalo in #1115

🎉 Exciting New Features

• Add --bids-database-dir parameter by @tsalo in #1116
• Ignore subcortical figures and plot FOV center of reference brains in executive summary by @tsalo in #1145

🐛 Bug Fixes

• Modify metadata and boilerplate to reflect updated motion filter parameters by @tsalo in #1114
• Add "subject" to native-space surface query by @tsalo in #1118
• Stop using config.nipype.memory_gb as memory limit in workflow nodes by @tsalo in #1122
• Pin dependencies to fix RTD build by @tsalo in #1136
• Fix adjacency matrix for CIFTI ReHo by @tsalo in #1120
• Use run-specific cwd for UK Biobank ingression interface by @tsalo in #1137
• Add third config to BIDSLayout that defines cohort entity by @tsalo in #1143
• Use standardized DVARS from Nipype by @tsalo in #1135

Other Changes

• Adopt Nipreps-style Config object by @tsalo in #1040
• Use pytest-env to capture warnings on CI runs by @tsalo in #1107
• Convert coverage values to float32 to address pandas warning by @tsalo in #1112
• Only describe the atlases selected by the user by @tsalo in #1126
• Fix API documentation by @tsalo in #1144
• Improve denoising tests by @tsalo in #1146

Full Changelog: 0.7.0...0.7.1

What's Changed

🛠 Breaking Changes

• Change default --min-time from 100 to 240 by @tsalo in #1115

🎉 Exciting New Features

• Add --bids-database-dir parameter by @tsalo in #1116

🐛 Bug Fixes

• Modify metadata and boilerplate to reflect updated motion filter parameters by @tsalo in #1114
• Add "subject" to native-space surface query by @tsalo in #1118
• Stop using config.nipype.memory_gb as memory limit in workflow nodes by @tsalo in #1122
• Pin dependencies to fix RTD build by @tsalo in #1136
• Fix adjacency matrix for CIFTI ReHo by @tsalo in #1120
• Use run-specific cwd for UK Biobank ingression interface by @tsalo in #1137

Other Changes

• Adopt Nipreps-style Config object by @tsalo in #1040
• Use pytest-env to capture warnings on CI runs by @tsalo in #1107
• Convert coverage values to float32 to address pandas warning by @tsalo in #1112
• Only describe the atlases selected by the user by @tsalo in #1126

Full Changelog: 0.7.0...0.7.1rc6

What's Changed

🛠 Breaking Changes

• Change default --min-time from 100 to 240 by @tsalo in #1115

🎉 Exciting New Features

• Add --bids-database-dir parameter by @tsalo in #1116

🐛 Bug Fixes

• Modify metadata and boilerplate to reflect updated motion filter parameters by @tsalo in #1114
• Add "subject" to native-space surface query by @tsalo in #1118
• Stop using config.nipype.memory_gb as memory limit in workflow nodes by @tsalo in #1122

Other Changes

• Adopt Nipreps-style Config object by @tsalo in #1040
• Use pytest-env to capture warnings on CI runs by @tsalo in #1107
• Convert coverage values to float32 to address pandas warning by @tsalo in #1112

Full Changelog: 0.7.0...0.7.1rc5

What's Changed

🛠 Breaking Changes

• Change default --min-time from 100 to 240 by @tsalo in #1115

🎉 Exciting New Features

• Add --bids-database-dir parameter by @tsalo in #1116

🐛 Bug Fixes

• Modify metadata and boilerplate to reflect updated motion filter parameters by @tsalo in #1114
• Add "subject" to native-space surface query by @tsalo in #1118

Other Changes

• Adopt Nipreps-style Config object by @tsalo in #1040
• Use pytest-env to capture warnings on CI runs by @tsalo in #1107
• Convert coverage values to float32 to address pandas warning by @tsalo in #1112

Full Changelog: 0.7.0...0.7.1rc4

What's Changed

Other Changes

• Adopt Nipreps-style Config object by @tsalo in #1040
• Use pytest-env to capture warnings on CI runs by @tsalo in #1107

Full Changelog: 0.7.0...0.7.1rc3

What's Changed

Other Changes

• Adopt Nipreps-style Config object by @tsalo in #1040

Full Changelog: 0.7.0...0.7.1rc2