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Setup file and analysis for running MELD folding simulation of protein G/L and their mutants can be found in
run_meld
. MELD installation can be found here. -
MSM analysis was done with PyEMMA shown in
adaptive_msm
. -
AlphaFold predictions were done with local installed ColabFold.
af_GL
contains all output structures.
Check the Reference. Please contact us if you need the simulation trajectories.