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@PDNALab

Perez Lab @ Chemistry UF

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  1. AF-CBA-pipeline AF-CBA-pipeline Public

    Forked from arupmondal835/AF-CBA-pipeline

    3 stage filtering pipeline for finding binding epitopes

    Python 5 1

  2. Competitive_binding Competitive_binding Public

    Jupyter Notebook 3

  3. extended-ensemble extended-ensemble Public

    Jupyter Notebook 2 2

  4. QM_MM_Study_P53-MDM2_Binding QM_MM_Study_P53-MDM2_Binding Public

    Inputs for QM, MM and MELD. Structural outputs

    Python 2

  5. NFold NFold Public

    Process Machine Learning Histogram data to setup MELD folding simulations

    Python 1 2

  6. GL_folding GL_folding Public

    The consensus view on how protein G/L fold via MD and ML.

    Jupyter Notebook 1

Repositories

Showing 10 of 16 repositories
  • ChemReality Public

    Students as Molecular Modelers

    PDNALab/ChemReality’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Jun 14, 2024
  • Tutorials Public

    PDNALab's tutorials about writing, running, compiling softwares and more.

    PDNALab/Tutorials’s past year of commit activity
    Python 0 0 0 0 Updated Apr 4, 2024
  • AF-CBA-pipeline Public Forked from arupmondal835/AF-CBA-pipeline

    3 stage filtering pipeline for finding binding epitopes

    PDNALab/AF-CBA-pipeline’s past year of commit activity
    Python 5 2 0 0 Updated Mar 10, 2024
  • extended-ensemble Public
    PDNALab/extended-ensemble’s past year of commit activity
    Jupyter Notebook 2 GPL-3.0 2 0 0 Updated Mar 3, 2023
  • QM_MM_Study_P53-MDM2_Binding Public

    Inputs for QM, MM and MELD. Structural outputs

    PDNALab/QM_MM_Study_P53-MDM2_Binding’s past year of commit activity
    Python 2 GPL-3.0 0 0 0 Updated Feb 24, 2023
  • MELD-DNA Public
    PDNALab/MELD-DNA’s past year of commit activity
    Python 0 0 1 0 Updated Jan 3, 2023
  • ComputationalChemistryClass Public
    PDNALab/ComputationalChemistryClass’s past year of commit activity
    0 0 0 0 Updated Nov 1, 2022
  • Competitive_binding Public
    PDNALab/Competitive_binding’s past year of commit activity
    Jupyter Notebook 3 0 0 0 Updated Sep 9, 2022
  • GL_folding Public

    The consensus view on how protein G/L fold via MD and ML.

    PDNALab/GL_folding’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Aug 12, 2022
  • VRWorkshops Public
    PDNALab/VRWorkshops’s past year of commit activity
    0 MIT 0 0 0 Updated Jul 7, 2022
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