Lists (9)
Stars
Tools to process and analyze deep sequencing data.
Embeddable genomic visualization component based on the Integrative Genomics Viewer
Exploratory Web Apps for Analyzing Clinical Trial Data
Continuous saving of tmux environment. Automatic restore when tmux is started. Automatic tmux start when computer is turned on.
Generate Panel of Normals, models or other similar references from lots of samples
A DSL for data-driven computational pipelines
Toolset for SV simulation, comparison and filtering
R package to organise and standardise your genomic variant calls obtained with different callers.
Plot structural variant signals from many BAMs and CRAMs
basic tmux settings everyone can agree on
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
This repo generates automatic documentation for pipelines or tools by using a pipeline.yaml file and producing both HTML and MD documents. The MD document can be uploaded to a readthedocs server fo…
Snippets plugin for obsidian
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
Sloc, Cloc and Code: scc is a very fast accurate code counter with complexity calculations and COCOMO estimates written in pure Go
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtool…
Python 3 library with good support for both reading and writing VCF