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@Clinical-Genomics-Lund

Clinical Genomics Lund

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  1. gens gens Public

    JavaScript 12 5

  2. nextflow_wgs nextflow_wgs Public

    Perl 6 5

  3. nextflow_microwgs nextflow_microwgs Public

    Perl 2 1

  4. nextflow_tumwgs nextflow_tumwgs Public

    Perl 2 2

  5. SomaticPanelPipeline SomaticPanelPipeline Public

    Nextflow 2

Repositories

Showing 10 of 54 repositories
  • bonsai Public

    Visualize and analyze resistance and outbreak of bacterial pathogen

    Clinical-Genomics-Lund/bonsai’s past year of commit activity
    Standard ML 4 GPL-3.0 1 26 1 Updated Nov 13, 2024
  • nextflow_wgs Public
    Clinical-Genomics-Lund/nextflow_wgs’s past year of commit activity
    Perl 6 5 80 (4 issues need help) 5 Updated Nov 13, 2024
  • SomaticPanelPipeline Public
    Clinical-Genomics-Lund/SomaticPanelPipeline’s past year of commit activity
    Nextflow 0 2 16 (1 issue needs help) 0 Updated Nov 13, 2024
  • PipeEval Public

    Evaluate changes to your pipelines.

    Clinical-Genomics-Lund/PipeEval’s past year of commit activity
    Python 0 0 1 0 Updated Nov 12, 2024
  • coyote_blueprinted Public
    Clinical-Genomics-Lund/coyote_blueprinted’s past year of commit activity
    Python 0 0 0 0 Updated Nov 11, 2024
  • bonsai-prp Public

    Pipeline output Processing Program for Bonsai

    Clinical-Genomics-Lund/bonsai-prp’s past year of commit activity
    Python 0 GPL-3.0 0 5 0 Updated Nov 11, 2024
  • Pipeline-validation-tools Public

    Set of tools for assisting verifications and validations.

    Clinical-Genomics-Lund/Pipeline-validation-tools’s past year of commit activity
    Python 0 0 0 0 Updated Nov 7, 2024
  • PGxModule Public

    PGxModule is an advanced Nextflow DSL2 workflow, designed to seamlessly integrate into your genomics pipeline. It empowers you to generate sample-specific reports with clinical guidelines, leveraging state-of-the-art variant detection in Genomic Medicine Sweden sequencing panels.

    Clinical-Genomics-Lund/PGxModule’s past year of commit activity
    Nextflow 1 GPL-3.0 0 6 (1 issue needs help) 0 Updated Nov 6, 2024
  • coyote_cli Public

    command line interface for coyote

    Clinical-Genomics-Lund/coyote_cli’s past year of commit activity
    Python 0 1 2 0 Updated Oct 22, 2024
  • genmod Public Forked from Clinical-Genomics/genmod

    Annotate models of genetic inheritance patterns in variant files (vcf files)

    Clinical-Genomics-Lund/genmod’s past year of commit activity
    Python 0 MIT 19 0 0 Updated Oct 18, 2024
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