Commits

Commits on May 31, 2024

Release v0.5.2
PaulJonasJost
committedMay 31, 2024
Merge branch 'main' into develop
PaulJonasJost
committedMay 31, 2024
prepare release v0.5.2 (#1407 )

committedMay 31, 2024

Commits on May 29, 2024

Fix JaxObjective (#1400 )

committedMay 29, 2024

Commits on May 26, 2024

Saves pypesto and python version to the problem. (#1382 )

PaulJonasJost
and
dweindl
committedMay 26, 2024

Commits on May 21, 2024

Variational inference with PyMC (#1306 )
arrjon
committedMay 21, 2024

Commits on May 16, 2024

Update test_thermodynamic_integration (#1385 )

committedMay 16, 2024
Calling prior in sampling with fixed parameters does not work (#1378 )
arrjon
committedMay 16, 2024

Commits on May 15, 2024

Fix in doc of visualise.optimization_stats (#1390 )
PaulJonasJost
committedMay 15, 2024
fix #1401 (#1402 )
PaulJonasJost
committedMay 15, 2024

Commits on May 14, 2024

Doc: Update references (#1292 )
dweindl
committedMay 14, 2024
More detailed defaults for problem.get_full_vector (#1393 )

PaulJonasJost
and
m-philipps
committedMay 14, 2024

Commits on May 8, 2024

update readme links (#1399 )

m-philipps
and
Doresic
committedMay 8, 2024

Commits on May 7, 2024

remove random.seed in favor of np.random.seed (#1391 )
PaulJonasJost
committedMay 7, 2024

Commits on May 6, 2024

Correct header for roadrunner example (#1394 )
PaulJonasJost
committedMay 6, 2024
add load method to Hdf5AmiciHistory (#1370 )
plakrisenko
committedMay 6, 2024

Commits on May 5, 2024

GHA: Test macos-14 (#1387 )
dweindl
committedMay 5, 2024

Commits on May 4, 2024

Fix pypesto.sample.geweke_test.spectrum for nfft<=3 (#1388 )
dweindl
committedMay 4, 2024

Commits on May 3, 2024

SacessOptimizer: collect worker stats (#1381 )
dweindl
committedMay 3, 2024
GHA: use macos-12 runner (#1386 )
dweindl
committedMay 3, 2024
Remove obsolete pymc scipy requirement
dweindl
committedMay 3, 2024
Update deprecated amici imports (#1384 )
dweindl
committedMay 3, 2024
Require and test python >=3.10 according to NEP 29 (#1379 )

committedMay 3, 2024

Commits on May 2, 2024

ESS optimizers: suppress divide-by-zero warnings; report n_eval (#1380 )
dweindl
committedMay 2, 2024
Correlation plot with nans (#1365 )

PaulJonasJost
and
m-philipps
committedMay 2, 2024

Commits on Apr 19, 2024

Relative: fix log of zero for default 0 sigma values (#1377 )

Doresic
and
arrjon
committedApr 19, 2024

Commits on Apr 18, 2024

Added option to sample startpoints of a problem, from the problem directly. (#1364 )

PaulJonasJost
and
m-philipps
committedApr 18, 2024
Require scipy<1.13.0 for pypesto[pymc] only for python3.9 (#1360 ) (#1376 )
dweindl
committedApr 18, 2024

Commits on Apr 17, 2024

move petab imports outside of try/except (#1355 )

m-philipps
and
dweindl
committedApr 17, 2024
Fix lagging version number -> 0.5.1
dweindl
committedApr 17, 2024

Commits on Apr 16, 2024

Merge pull request #1374 from ICB-DCM/develop
PaulJonasJost
committedApr 16, 2024
fixed wrong filepath for config file. (#1373 )
PaulJonasJost
committedApr 16, 2024
Updated changelog accordingly
PaulJonasJost
committedApr 16, 2024
Merge branch 'main' into develop
PaulJonasJost
committedApr 16, 2024

Commits on Apr 15, 2024

Removing Benchmark collection for deploy. Update action versions. (#1371 ) (#1372 )
PaulJonasJost
committedApr 15, 2024