MATLB package for processing edf EEG data

State Scoring, this has been moved to https://github.com/buzsakilab/buzcode/tree/master/preprocessing/behavioralStateDetection

Accompanying code for "State Estimation of a Physical System without Governing Equations"

Curated list of interactive ML demos

Code used in the paper "Time Series Clustering via Community Detection in Networks"

DeepLabCut based data analysis package including pose estimation and representation learning mediated behavior recognition

Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA

A Streamlit application for visualizing, processing, and analyzing fiber photometric data from .csv files.

State Space Models library in JAX

Open-source, graph-based Python code generator and analysis toolbox for dynamical systems (pre-implemented and custom models). Most pre-implemented models belong to the family of neural population …

A dual-SPI display mouse VR headset, powered by Raspberry Pi and the Godot game engine

NSF REUsite at NYSPI

Scripts to convert .ffii FreezeFrame files to .webm

A Python package for construction and analysis of ordinal partition networks from time-series data.

Guided Photometry Analysis in Python, a free and open-source FP analysis tool.

Accelerated pose estimation and tracking using semi-supervised convolutional networks.

A collective list of free APIs

Analyze freezing rate and other behavioral aspects of animals, using data from DeepLabCut. Especially optimized for cued fear conditioning.

This repository contains files to build a head-fixed linear treadmill apparatus and to run related data analysis.

Python code for quantification of FISH puncta in neurites

Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.

Materials for Mathematical Tools for Neuroscience course at Harvard (Neurobio 212)

Contains behavioral control files for use with MATLAB 2021B+ and Arduino

A collection of virtual-reality tools for biomedical research

Free, platform independent, behavior tracking software.

Code for correlation analysis of two-color imaging data with spectral unmixing

Gunpowder tutorial given at the I2K 2020 conference

Match suite2p ROIs between imaging sessions