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  • tFC-rig Public

    trace fear conditioning rig

    Python GNU General Public License v3.0 Updated Aug 16, 2024
  • els_project Public

    Jupyter Notebook 1 GNU General Public License v3.0 Updated Aug 1, 2024
  • pupillometry rig

    G-code GNU General Public License v3.0 Updated Jul 31, 2024
  • analysis code for context project

    Jupyter Notebook 1 MIT License Updated Jul 25, 2024
  • basic routines for reading, visualizing and analyzing fiberphotometry recordings

    Jupyter Notebook MIT License Updated Jul 25, 2024
  • HTML Apache License 2.0 Updated Jul 16, 2024
  • PowerShell GNU General Public License v3.0 Updated Jul 16, 2024
  • HallPassVR Public

    virtual reality environment for mice

    Python 1 GNU General Public License v3.0 Updated Jul 3, 2024
  • sleep Public

    analysis code for sleep data

    Jupyter Notebook Updated Jun 2, 2024
  • Python GNU General Public License v3.0 Updated Jan 15, 2024
  • 3Dscript Public

    Forked from bene51/3Dscript
    Java BSD 2-Clause "Simplified" License Updated Nov 29, 2023
  • rastermap Public

    Forked from MouseLand/rastermap

    a visualization method for neural data

    Python GNU General Public License v3.0 Updated Nov 29, 2023
  • deepof Public

    Forked from mlfpm/deepof

    DeepLabCut based data analysis package including pose estimation and representation learning mediated behavior recognition

    Python MIT License Updated Aug 20, 2023
  • optoImaging Public

    Description of in vivo optogenetic activation during two-photon imaging (Turi et al. 2019 Neuron)

    HTML 2 GNU General Public License v3.0 Updated Jan 25, 2023
  • Variational Animal Motion Embedding - A tool for time series embedding and clustering

    Python GNU General Public License v3.0 Updated Oct 5, 2022
  • VRmouse Public

    SCSS MIT License Updated Sep 16, 2022
  • nsf-reu Public archive

    NSF REUsite at NYSPI

    SCSS 1 MIT License Updated Aug 17, 2022
  • nyspi-reu Public archive

    test website for nyspi-reu site

    Apache License 2.0 Updated Aug 8, 2022
  • static version of the behavior recording software used with the 2p rig.

    C++ Updated Mar 10, 2022
  • sleep-box Public

    GNU General Public License v3.0 Updated Dec 19, 2021
  • turi-lab Public

    GNU General Public License v3.0 Updated Nov 20, 2021
  • data analysis in R

    R MIT License Updated Aug 22, 2021
  • Python code for quantification of FISH puncta in neurites

    Jupyter Notebook Updated Jul 27, 2021
  • webscraping Public archive

    covid19 related webscraping project

    Jupyter Notebook Updated Jun 2, 2021
  • contextBox Public

    Behavior box for mice conductung contextual discrimination task

    MIT License Updated May 25, 2021
  • Jupyter Notebook Updated Apr 22, 2020
  • Markerless pose estimation of user-defined features with deep learning for all animals, including humans

    Python GNU Lesser General Public License v3.0 Updated Apr 5, 2020
  • treadmill Public

    partlist and assambly instruction for DIY treadmill for rodent imaging

    GNU General Public License v3.0 Updated Mar 19, 2020
  • CellReg Public

    Forked from zivlab/CellReg

    Registration of cells across sessions.

    MATLAB GNU General Public License v2.0 Updated Sep 20, 2019
  • behaviorProtocols Public archive

    programs for Medassociates behavior chambers

    MIT License Updated Aug 27, 2019