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Gaius-Augustus

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  1. BRAKER BRAKER Public

    BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

    Perl 353 79

  2. Augustus Augustus Public

    Genome annotation with AUGUSTUS

    C++ 281 108

  3. GALBA GALBA Public

    GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several close…

    Perl 127 4

  4. TSEBRA TSEBRA Public

    Forked from LarsGab/TSEBRA

    TSEBRA: Transcript Selector for BRAKER

    Python 46 5

  5. MakeHub MakeHub Public

    Fully automated generation of UCSC assembly hubs

    Python 33 4

  6. Tiberius Tiberius Public

    deep learning gene finder

    Python 26 1

Repositories

Showing 10 of 19 repositories
  • GALBA Public

    GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.

    Gaius-Augustus/GALBA’s past year of commit activity
    Perl 127 4 8 1 Updated Oct 8, 2024
  • Tiberius Public

    deep learning gene finder

    Gaius-Augustus/Tiberius’s past year of commit activity
    Python 26 MIT 1 5 0 Updated Oct 8, 2024
  • learnMSA Public

    Learning and Aligning Large Protein Families (MSA-HMM)

    Gaius-Augustus/learnMSA’s past year of commit activity
    Jupyter Notebook 18 MIT 1 5 0 Updated Oct 7, 2024
  • MakeHub Public

    Fully automated generation of UCSC assembly hubs

    Gaius-Augustus/MakeHub’s past year of commit activity
    Python 33 GPL-3.0 4 0 0 Updated Oct 2, 2024
  • Augustus Public

    Genome annotation with AUGUSTUS

    Gaius-Augustus/Augustus’s past year of commit activity
    C++ 281 108 152 5 Updated Sep 30, 2024
  • Diatom_annotation_scripts Public

    Helper scripts to prepare a functionally decorated BRAKER output file for upload to NCBI Genomes

    Gaius-Augustus/Diatom_annotation_scripts’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 16, 2024
  • tf_tcmc Public Forked from liemonade/tf_tcmc

    Tensorflow Implementation for calculating graphical probabilistical models with edge transitions modelled by Time-reversible Continuous-time Markov Chains (TCMC).

    Gaius-Augustus/tf_tcmc’s past year of commit activity
    Python 2 1 1 0 Updated Aug 16, 2024
  • clamsa Public Forked from liemonade/clamsa

    ClaMSA (Classify Multiple Sequence Alignments).

    Gaius-Augustus/clamsa’s past year of commit activity
    Python 11 2 4 (1 issue needs help) 0 Updated Aug 13, 2024
  • VARUS Public

    RNA-Seq sampling

    Gaius-Augustus/VARUS’s past year of commit activity
    C++ 8 2 4 0 Updated Jul 1, 2024
  • TSEBRA Public Forked from LarsGab/TSEBRA

    TSEBRA: Transcript Selector for BRAKER

    Gaius-Augustus/TSEBRA’s past year of commit activity
    Python 46 6 11 0 Updated May 23, 2024
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