Ambiguous method overloading for method java.lang.Integer#div

[mictadlo]

Hi,
I have got the below error:

Ambiguous method overloading for method java.lang.Integer#div. Cannot resolve which method to invoke for [null] due to overlapping prototypes between: [class java.lang.Character] [class java.lang.Number]

after I clicked create a new annotation -> gene.

What could cause it?

Thank you in advance,

Michal

[nathandunn]

Could you provide a screen shot of the gene and view the details of the underlying sequence (and/or maybe any raw GFF)? Typically I see this from bad evidence input. Nathan

…

On Feb 20, 2019, at 9:56 PM, Michał T. Lorenc ***@***.***> wrote: Hi, I have got the below error: Ambiguous method overloading for method java.lang.Integer#div. Cannot resolve which method to invoke for [null] due to overlapping prototypes between: [class java.lang.Character] [class java.lang.Number] after I clicked create a new annotation -> gene. What could cause it? Thank you in advance, Michal — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#2065>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AAt2qhzrfhcUWfYCk5RkFaIQmnm_Q7cQks5vPjTwgaJpZM4bGtVM>.

[mictadlo]

This happens with the below gene:

I have just sent you an email with the gff3 file.

Thank you in advance,

Michal

[nathandunn]

It requires a shared point login. Can you “View details” on it? If its small enough <1 GB you can just email directly ([email protected] <mailto:[email protected]>) or send it via a free large file share program like drop-box or https://wetransfer.com/ <https://wetransfer.com/>. Nathan

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On Feb 21, 2019, at 2:02 PM, Michał T. Lorenc ***@***.***> wrote: This happens with the below gene: <https://user-images.githubusercontent.com/588297/53204620-c7a50680-3677-11e9-9b44-784b7fbbdbd8.png> I have just sent you an email with the gff3 file. Thank you in advance, Michal — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#2065 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AAt2qrdNQ3hd_xBbeDJ4RXzv27eihIZWks5vPxdZgaJpZM4bGtVM>.

[mictadlo]

I have just sent you another email.

[nathandunn]

@mictadlo got it. If I can get to it by tomorrow I will . . otherwise early next week.

[nathandunn]

@mictadlo Not seeing anything obvious . . . can you send me your entire jbrowse directory?

I'm thinking that it might be related to #2063

Thanks.

[abretaud]

I think this is fixed by #2068, I had this problem because apollo didn't detect that the genome was indexed with the new faidx method

[nathandunn]

@mictadlo Can you retest against master and see if this is still a problem for you?

[mictadlo]

Thank you it works.

[nathandunn]

:+1 @abretaud