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Adding results for sprint 2 #13

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adding purchasing decisions to repo
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hannahbrucemacdonald committed Aug 25, 2020
commit b85ae5c6ef4f776823aad643ef4008592fe1efa1
30 changes: 30 additions & 0 deletions synthetic-enumeration/sprint2/README.md
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### Sprint 2 synthetic purchasing

Results files accessed from folding at home server 10am BST 25-08-2020.
3363 molecules analysed (4018 expanded stereoisomers) from second covid-moonshot sprint.


### Identifying compounds for purchasing
Compounds filtered to purchase molecules with predicted affinity improvements of 1 kcal/mol, relative to molecule `TRY-UNI-2eddb1ff-7`

* Molecule `EN300-1940535` removed, as furan less preferable than comparible (in both structure and predicted affinity `EN300-330332`

Following molecules were removed due to alkyl-bromide residues
* `EN300-1274653`
* `EN300-70105`
* `EN300-1915724`
* `EN300-1909681`
* `EN300-1274638`
* `EN300-1910987`
* `EN300-701252`
* `EN300-1274639`
* `EN300-1914939`

Molecules flagged for consideration are those containing ester functional group

| Title | Smiles | Notes |
|-------|--------|-------|
|EN300-1886131 | Cc1ccncc1NC(=O)Cc2cc(cc(c2)Cl)OCc3c(nc(s3)NC(=O)OC(C)(C)C)C | |
|EN300-843777 |CCOC(=O)C(Cn1cc(nn1)COc2cc(cc(c2)Cl)CC(=O)Nc3cnccc3C)(F)F | Neighbouring F's will activate ester - don't make |
|EN300-60436 |CCOC(=O)c1c2ccccc2oc1COc3cc(cc(c3)Cl)CC(=O)Nc4cnccc4C | |
|EN300-301686 |Cc1ccncc1NC(=O)Cc2cc(cc(c2)Cl)OCc3c4ccccc4n(n3)C(=O)OC(C)(C)C| |
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