Stars
Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). PHP takes the complete or partial genomic sequences of prokar…
A Toolkit for analyzing next-generation DNA Re-Sequencing data
Automatically exported from code.google.com/p/cdhit
The second version of the Kraken taxonomic sequence classification system
GUI/CommandLine Tool Box for biologistists to utilize NGS data.
A proof-of-concept, automated and reproducible pipeline for predicting functional associations between pVOGs.
Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation
Code from the Edwards lab, including bioinformatics, image analysis and more. All this code is created and maintained by folks at Rob Edwards' bioinformatics lab at Flinders University
Fast genome analysis from unassembled short reads
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
🎄Visualization and annotation of phylogenetic trees
CNN based classifier for detecting viral sequences among metagenomic contigs
customizable pipeline to identify viral sequences from (meta)genomic data
Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)
This is a deep learning method for identification of viral contigs with short length from metagenomic data.
MARVEL: Metagenomic Analyses and Retrieval of Viral ELements
PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Detecting contamination in NGS data and multi-species analysis