Bump version: 0.3.0 → 0.3.1

Edinburgh-Genome-Foundry · Aug 25, 2023 · f11a5c7 · f11a5c7
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Showing 5 changed files with 14 additions and 14 deletions.
diff --git a/.bumpversion.cfg b/.bumpversion.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.3.0
+current_version = 0.3.1
 commit = True
 tag = True
 

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -16,9 +16,9 @@ jobs:
  - name: "Build Docker image"
  run: |
  docker build . -f containers/Dockerfile \
- -t ghcr.io/edinburgh-genome-foundry/sequeduct:v0.3.0 \
+ -t ghcr.io/edinburgh-genome-foundry/sequeduct:v0.3.1 \
  -t ghcr.io/edinburgh-genome-foundry/sequeduct:latest
  - name: "Release Docker image"
  run: |
- docker push ghcr.io/edinburgh-genome-foundry/sequeduct:v0.3.0
+ docker push ghcr.io/edinburgh-genome-foundry/sequeduct:v0.3.1
  docker push ghcr.io/edinburgh-genome-foundry/sequeduct:latest
diff --git a/README.md b/README.md
@@ -4,7 +4,7 @@
 
 # Sequeduct
 
-![version](https://img.shields.io/badge/current_version-0.3.0-blue)
+![version](https://img.shields.io/badge/current_version-0.3.1-blue)
 
 Sequencing analysis pipeline (aqueduct) for validating plasmids and DNA assembly constructs, using long reads.
 
@@ -17,13 +17,13 @@ Install [Nextflow](https://www.nextflow.io/) and [Docker](https://www.docker.com
 Pull the Nextflow pipeline:
 
 ```bash
-nextflow pull edinburgh-genome-foundry/Sequeduct -r v0.3.0
+nextflow pull edinburgh-genome-foundry/Sequeduct -r v0.3.1
 ```
 
 Pull the Docker image that contains the required software (requires access to EGF's container repo):
 
 ```bash
-docker pull ghcr.io/edinburgh-genome-foundry/sequeduct:0.3.0
+docker pull ghcr.io/edinburgh-genome-foundry/sequeduct:0.3.1
 ```
 
 Alternatively, build the image locally from the cloned repo:
@@ -38,25 +38,25 @@ Create a directory for your project and copy (or link) the FASTQ directories fro
 
 ```bash
 # Preview
-nextflow run edinburgh-genome-foundry/Sequeduct -r v0.3.0 -entry preview --fastq_dir='fastq_pass' \
+nextflow run edinburgh-genome-foundry/Sequeduct -r v0.3.1 -entry preview --fastq_dir='fastq_pass' \
  --reference_dir='genbank' \
  --sample_sheet='sample_sheet.csv' \
  -profile docker
 # Analysis
-nextflow run edinburgh-genome-foundry/Sequeduct -r v0.3.0 -entry analysis --fastq_dir='fastq_pass' \
+nextflow run edinburgh-genome-foundry/Sequeduct -r v0.3.1 -entry analysis --fastq_dir='fastq_pass' \
  --reference_dir='genbank' \
  --sample_sheet='sample_sheet.csv' \
  --projectname='EGF project' \
  -profile docker
 # Review
-nextflow run edinburgh-genome-foundry/Sequeduct -r v0.3.0 -entry review --reference_dir='genbank' \
+nextflow run edinburgh-genome-foundry/Sequeduct -r v0.3.1 -entry review --reference_dir='genbank' \
  --results_csv='results_sheet.csv' \
  --projectname='EGF project review' \
  --all_parts='parts_fasta/part_sequences.fasta' \
  --assembly_plan='assembly_plan.csv' \
  -profile docker
 # De novo assembly
-nextflow run edinburgh-genome-foundry/Sequeduct -r v0.3.0 -entry assembly --fastq_dir='fastq_pass' \
+nextflow run edinburgh-genome-foundry/Sequeduct -r v0.3.1 -entry assembly --fastq_dir='fastq_pass' \
  --results_csv='assembly_sheet.csv' \
  -profile docker 
 ```

diff --git a/conf/base.config b/conf/base.config
@@ -2,7 +2,7 @@
 manifest {
  name = 'sequeduct'
  description = 'Sequencing analysis pipeline (aqueduct) for validating plasmids, using long reads.'
- version = '0.3.0'
+ version = '0.3.1'
  homePage = 'https://github.com/Edinburgh-Genome-Foundry/Sequeduct.git'
  author = 'Peter Vegh'
  nextflowVersion = '>=21.10.6'
@@ -40,7 +40,7 @@ profiles {
  charliecloud.enabled = false
 
  // specify the container to be used
- process.container = "ghcr.io/edinburgh-genome-foundry/sequeduct:v0.3.0"
+ process.container = "ghcr.io/edinburgh-genome-foundry/sequeduct:v0.3.1"
  }
 
  singularity {
@@ -52,7 +52,7 @@ profiles {
  charliecloud.enabled = false
 
  // specify the container to be used
- process.container = "ghcr.io/edinburgh-genome-foundry/sequeduct:v0.3.0"
+ process.container = "ghcr.io/edinburgh-genome-foundry/sequeduct:v0.3.1"
  }
 
  // Son of Grid Engine configuration

diff --git a/containers/Dockerfile b/containers/Dockerfile
@@ -71,4 +71,4 @@ LABEL org.opencontainers.image.documentation="https://github.com/edinburgh-genom
 LABEL org.opencontainers.image.source="https://github.com/edinburgh-genome-foundry/sequeduct/"
 LABEL org.opencontainers.image.vendor="edinburgh-genome-foundry"
 LABEL org.opencontainers.image.authors="Peter Vegh"
-LABEL org.opencontainers.image.revision="v0.3.0"
+LABEL org.opencontainers.image.revision="v0.3.1"