Bump version: 0.2.2 → 0.2.3

Edinburgh-Genome-Foundry · Sep 1, 2022 · a190f30 · a190f30
1 parent ea8b593
commit a190f30
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diff --git a/.bumpversion.cfg b/.bumpversion.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.2.2
+current_version = 0.2.3
 commit = True
 tag = True
 

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -21,9 +21,9 @@ jobs:
  - name: "Build Docker image"
  run: |
  docker build . -f containers/Dockerfile \
- -t ghcr.io/edinburgh-genome-foundry/sequeduct:v0.2.2 \
+ -t ghcr.io/edinburgh-genome-foundry/sequeduct:v0.2.3 \
  -t ghcr.io/edinburgh-genome-foundry/sequeduct:latest
  - name: "Release Docker image"
  run: |
- docker push ghcr.io/edinburgh-genome-foundry/sequeduct:v0.2.2
+ docker push ghcr.io/edinburgh-genome-foundry/sequeduct:v0.2.3
  docker push ghcr.io/edinburgh-genome-foundry/sequeduct:latest
diff --git a/README.md b/README.md
@@ -4,7 +4,7 @@
 
 # Sequeduct
 
-![version](https://img.shields.io/badge/current_version-0.2.2-blue)
+![version](https://img.shields.io/badge/current_version-0.2.3-blue)
 
 Sequencing analysis pipeline (aqueduct) for validating plasmids and DNA assembly constructs, using long reads.
 
@@ -17,7 +17,7 @@ Install [Nextflow](https://www.nextflow.io/) and [Docker](https://www.docker.com
 Pull the Nextflow pipeline:
 
 ```bash
-nextflow pull edinburgh-genome-foundry/Sequeduct -r v0.2.2
+nextflow pull edinburgh-genome-foundry/Sequeduct -r v0.2.3
 ```
 
 Pull the Docker image that contains the required software (requires access to EGF's container repo):
@@ -38,25 +38,25 @@ Create a directory for your project and copy (or link) the FASTQ directories fro
 
 ```bash
 # Preview
-nextflow run edinburgh-genome-foundry/Sequeduct -r v0.2.2 -entry preview --fastq_dir='fastq' \
+nextflow run edinburgh-genome-foundry/Sequeduct -r v0.2.3 -entry preview --fastq_dir='fastq' \
  --reference_dir='genbank' \
  --sample_sheet='sample_sheet.csv' \
  -profile docker
 # Analysis
-nextflow run edinburgh-genome-foundry/Sequeduct -r v0.2.2 -entry analysis --fastq_dir='fastq' \
+nextflow run edinburgh-genome-foundry/Sequeduct -r v0.2.3 -entry analysis --fastq_dir='fastq' \
  --reference_dir='genbank' \
  --sample_sheet='sample_sheet.csv' \
  --projectname='EGF project' \
  -profile docker
 # Review
-nextflow run edinburgh-genome-foundry/Sequeduct -r v0.2.2 -entry review --reference_dir='genbank' \
+nextflow run edinburgh-genome-foundry/Sequeduct -r v0.2.3 -entry review --reference_dir='genbank' \
  --results_csv='results_sheet.csv' \
  --projectname='EGF project review' \
  --all_parts='parts_fasta/part_sequences.fasta' \
  --assembly_plan='assembly_plan.csv' \
  -profile docker
 # De novo assembly
-nextflow run edinburgh-genome-foundry/Sequeduct -r v0.2.2 -entry assembly --fastq_dir='fastq' \
+nextflow run edinburgh-genome-foundry/Sequeduct -r v0.2.3 -entry assembly --fastq_dir='fastq' \
  --results_csv='results_sheet.csv' \
  --projectname='EGF assembly' \
  -profile docker 

diff --git a/conf/base.config b/conf/base.config
@@ -2,7 +2,7 @@
 manifest {
  name = 'sequeduct'
  description = 'Sequencing analysis pipeline (aqueduct) for validating plasmids, using long reads.'
- version = '0.2.2'
+ version = '0.2.3'
  homePage = 'https://github.com/Edinburgh-Genome-Foundry/Sequeduct.git'
  author = 'Peter Vegh'
  nextflowVersion = '>=21.10.6'
@@ -40,7 +40,7 @@ profiles {
  charliecloud.enabled = false
 
  // specify the container to be used
- process.container = "ghcr.io/edinburgh-genome-foundry/sequeduct:v0.2.2"
+ process.container = "ghcr.io/edinburgh-genome-foundry/sequeduct:v0.2.3"
  }
 
  singularity {
@@ -52,7 +52,7 @@ profiles {
  charliecloud.enabled = false
 
  // specify the container to be used
- process.container = "ghcr.io/edinburgh-genome-foundry/sequeduct:v0.2.2"
+ process.container = "ghcr.io/edinburgh-genome-foundry/sequeduct:v0.2.3"
  }
 
  // Son of Grid Engine configuration

diff --git a/containers/Dockerfile b/containers/Dockerfile
@@ -72,4 +72,4 @@ LABEL org.opencontainers.image.documentation="https://github.com/edinburgh-genom
 LABEL org.opencontainers.image.source="https://github.com/edinburgh-genome-foundry/sequeduct/"
 LABEL org.opencontainers.image.vendor="edinburgh-genome-foundry"
 LABEL org.opencontainers.image.authors="Peter Vegh"
-LABEL org.opencontainers.image.revision="v0.2.2"
+LABEL org.opencontainers.image.revision="v0.2.3"