Test assembly plan parameter

Edinburgh-Genome-Foundry · Apr 25, 2024 · ce94b67 · ce94b67
1 parent 71d288d
commit ce94b67
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diff --git a/tests/data/assembly_plan.csv b/tests/data/assembly_plan.csv
@@ -0,0 +1,4 @@
+construct,parts,,,
+EGF24_1,backbone,seq1,seq2,terminator
+EGF24_2,backbone,seq1,sequence3,terminator
+EGF24_3,backbone,seq1,sequence3,terminator
diff --git a/tests/test_SeqCollection.py b/tests/test_SeqCollection.py
@@ -4,6 +4,7 @@
 
 data_dir = os.path.join("tests", "data")
 seq_fasta = os.path.join(data_dir, "test.fa")
+assembly_plan = os.path.join(data_dir, "assembly_plan.csv")
 
 
 def test_SeqCollection():
@@ -15,6 +16,7 @@ def test_SeqCollection():
  min_length=20,
  max_length=40,
  name_length=10,
+ assembly_plan=assembly_plan,
  )
  assert seq_coll.n_seq == 6
  assert seq_coll.n_bp == 175
@@ -26,6 +28,8 @@ def test_SeqCollection():
  assert len(seq_coll.repeat_names) == 1
  assert len(seq_coll.repeat_seq) == 1
  assert len(seq_coll.reverse_complement_seq) == 2
+ assert len(seq_coll.not_in_plan) == 2
+ assert seq_coll.total_savings == 62
 
 
 def test_read_fasta():