Fix #81

dna_features_viewer/CircularGraphicRecord/ArrowWedge.py

@@ -36,10 +36,11 @@ class ArrowWedge(mpatches.Wedge):
  """
 
  def __init__(self, center, radius, theta1, theta2, width, direction=+1, **kwargs):
-
  self.direction = direction
  self.radius = radius
- mpatches.Wedge.__init__(self, center, radius, theta1, theta2, width, **kwargs)
+ mpatches.Wedge.__init__(
+ self, center, radius, theta1, theta2, width=width, **kwargs
+ )
  self._recompute_path()
 
  def _recompute_path(self):

dna_features_viewer/CircularGraphicRecord/CircularGraphicRecord.py

@@ -51,7 +51,6 @@ def __init__(
  labels_spacing=12,
  **kw
  ):
-
  self.radius = 1.0
  self.sequence_length = sequence_length
  self.features = features
@@ -61,8 +60,7 @@ def __init__(
  self.labels_spacing = labels_spacing
 
  def initialize_ax(self, ax, draw_line, with_ruler):
- """Initialize the ax with a circular line, sets limits, aspect etc.
- """
+ """Initialize the ax with a circular line, sets limits, aspect etc."""
 
  if draw_line:
  circle = mpatches.Circle(
@@ -111,11 +109,7 @@ def finalize_ax(
  ax.figure.set_size_inches(figure_width, figure_width * ratio)
 
  def plot_feature(self, ax, feature, level):
- """Plot an ArrowWedge representing the feature at the given height
- level.
-
-
- """
+ """Plot an ArrowWedge representing the feature at the given height level."""
  a_start = self.position_to_angle(feature.start)
  a_end = self.position_to_angle(feature.end)
  a_start, a_end = sorted([a_start, a_end])
@@ -140,8 +134,7 @@ def position_to_angle(self, position):
  return 90 - a
 
  def coordinates_in_plot(self, position, level):
- """Convert a sequence position and height level to (x, y) coordinates.
- """
+ """Convert a sequence position and height level to (x, y) coordinates."""
  r = self.radius + level * self.feature_level_height
  angle = self.position_to_angle(position)
  rad_angle = np.deg2rad(angle)
@@ -157,7 +150,7 @@ def determine_annotation_height(self, max_annotations_level):
  return min(0.25, 3.0 * self.radius / (1.0 + max_annotations_level))
 
  def compute_padding(self, ax):
- ""
+ """"""
  ax_width = ax.get_window_extent(ax.figure.canvas.get_renderer()).width
  xmin, xmax = ax.get_xlim()
  return 3 * self.labels_spacing * (xmax - xmin) / (1.0 * ax_width)