Comment on test

tests/test_gel_analysis.py

@@ -1,33 +1,44 @@
 """
-Basic tests to check that the core functionalities are at least running.
+Complex validation test.
 """
 
 import matplotlib
+
 matplotlib.use("Agg")
 
 import os
-from collections import OrderedDict
-from bandwitch import (ClonesObservations)
-from Bio import SeqIO, Restriction
-import pytest
+from bandwitch import ClonesObservations
 
 
 def test_complex_validation(tmpdir):
- data_dir = os.path.join('tests', 'test_data', 'complex_validation_data')
- records_path = os.path.join(data_dir, 'constructs_sequences.zip')
- constructs_map_path = os.path.join(data_dir, 'constructs_map.xls')
- digestions_map_path = os.path.join(data_dir, 'digestions_map.xls')
- aati_zip_path = os.path.join(data_dir, 'digestion_results.zip')
+ data_dir = os.path.join("tests", "test_data", "complex_validation_data")
+ records_path = os.path.join(data_dir, "constructs_sequences.zip")
+ constructs_map_path = os.path.join(data_dir, "constructs_map.xls")
+ digestions_map_path = os.path.join(data_dir, "digestions_map.xls")
+ aati_zip_path = os.path.join(data_dir, "digestion_results.zip")
  clones = ClonesObservations.from_files(
  records_path=records_path,
  constructs_map_path=constructs_map_path,
  aati_zip_path=aati_zip_path,
- digestions_map_path=digestions_map_path
+ digestions_map_path=digestions_map_path,
  )
  validations = clones.validate_all_clones(relative_tolerance=0.03)
  clones.plot_validations_plate_map(validations)
  clones.plot_all_validations_patterns(validations)
  partial_digest_analysis = clones.partial_digests_analysis()
  clones.plot_partial_digests_analysis(partial_digest_analysis)
  summary_table = clones.validations_summary_table(
- validations, target=os.path.join(str(tmpdir), 'table.csv'))
+ validations, target=os.path.join(str(tmpdir), "table.csv")
+ )
+
+
+# Chosen digestions, for reference:
+# C00 EcoRI,PvuI
+# C01 EcoRI,PvuI
+# C02 EcoRI,PvuI
+# C03 EcoRI,PvuI
+# C04 EcoRI,PvuI
+# C05 EcoRI,PvuI
+# C06 AseI,EcoRI
+# C07 AseI,EcoRI
+# C08 AseI,EcoRI