Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Allow SlideData to use existing h5path files #337

Open
wants to merge 22 commits into
base: load-data-in-workers
Choose a base branch
from
Open

Allow SlideData to use existing h5path files #337

Changes from 1 commit
Commits
Show all changes
22 commits
Select commit Hold shift + click to select a range
cab0409
Store masks as bools
tddough98 Oct 4, 2022
6e6f802
Use dtype from SlideData constructor
tddough98 Oct 4, 2022
6dbf069
Merge branch 'merge-master' into change-dtypes
tddough98 Oct 14, 2022
be5ed26
Update h5path documentation
tddough98 Oct 14, 2022
8b2b202
Enable running pipelines on existing tiles
tddough98 Oct 20, 2022
6a08690
Debug tests
tddough98 Oct 20, 2022
201b60d
Debug tests
tddough98 Oct 20, 2022
40e8260
Debug tests
tddough98 Oct 20, 2022
ba9cfe0
Add test to exercise pipeline on h5path
tddough98 Oct 20, 2022
f7814ac
Merge branch 'change-dtypes' into use-existing-tiles
tddough98 Oct 20, 2022
6d4cc11
Debug test
tddough98 Oct 20, 2022
84a5071
Fix tile behavior
tddough98 Oct 20, 2022
1ea497f
Remove private _add_tiles
tddough98 Oct 20, 2022
8572d49
Fix syntax
tddough98 Oct 20, 2022
98b611b
Remove pdb
tddough98 Oct 20, 2022
c7c28a8
Add missing not
tddough98 Oct 20, 2022
8c78593
Revert making all masks boolean
tddough98 Oct 20, 2022
27e3db8
Merge branch 'change-dtypes' into use-existing-tiles
tddough98 Oct 20, 2022
bd3b154
Change test to not expect KeyError
tddough98 Oct 20, 2022
b0b3b98
Merge branch 'load-data-in-workers' into use-existing-tiles
tddough98 Oct 25, 2022
0662001
Add noqa: F811 for _caplog
tddough98 Oct 25, 2022
9d2bc28
Merge branch 'merge-master' into use-existing-tiles
tddough98 Oct 25, 2022
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Prev Previous commit
Next Next commit
Fix syntax
  • Loading branch information
@tddough98
tddough98 committed Oct 20, 2022
commit 8572d4983eb836202d820ef2639be15b882da09c
2 changes: 1 addition & 1 deletion pathml/core/h5managers.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -257,7 +257,7 @@ def remove_tile(self, key):
if str(key) in self.h5["tiles"].keys():
del self.h5["tiles"][str(key)]
else:
logger.info((f"key {key} is not in Tiles")
logger.info(f"key {key} is not in Tiles")

def add_mask(self, key, mask):
"""
Expand Down