Debug test

tests/integration_tests/test_pipeline_running.py

@@ -194,13 +194,17 @@ def test_pipeline_overlapping_tiles(tmp_path, stride, pad, tile_size):
 def test_pipeline_on_h5path(tmp_path, dist, cluster):
  save_path = str(tmp_path) + str(np.round(np.random.rand(), 8)) + "HE_slide.h5"
  # Make h5path
- slide = HESlide("tests/testdata/small_HE.svs")
+ slide = HESlide(
+ "tests/testdata/small_HE.svs",
+ # need to save as np.uint8 to be able to run BoxBlur after reloading h5path
+ dtype=np.uint8,
+ )
  pipeline = Pipeline([BoxBlur(kernel_size=15)])
  cli = Client(cluster) if dist else None
  slide.run(pipeline, distributed=dist, client=cli)
  slide.write(path=save_path)
  # Load saved h5path and run pipeline
- h5path_slide = HESlide(save_path, dtype=np.uint8)
+ h5path_slide = HESlide(save_path)
  h5path_slide.run(pipeline, distributed=dist, client=cli)
  h5path_slide.write(path=save_path)