Python library to access Gene Expression Omnibus Database (GEO)

A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.

This is a code tutorial for rna or dna sequence mapping by myself-RyanYip

A shiny app to perform single and multifactor differential analysis using DESeq2, edgeR, and limma

Pipeline of somatic variant analysis using Waldenstrom macroglobulinemia patient’s RNA-seq data, including tools like STAR, HTseq, VarScan in parallel computing in SGE clusters, Deseq2 and GSEA in R

RNA seq pipeline designed for paired end reads using HTSEQ for producing files needed for visualizing transcriptomic data with DESEQ2

SLURM job temps @UAlbany

HTSeq TSS plot tutorial

The original LG3 pipeline

Build Docker container for HTSeq and (optionally) convert to Apptainer/Singularity