A DSL for data-driven computational pipelines
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Updated
Aug 21, 2024 - Groovy
A DSL for data-driven computational pipelines
a pytorch lib with state-of-the-art architectures, pretrained models and real-time updated results
Tools for computation on batch systems
🚀 R package future.batchtools: A Future API for Parallel and Distributed Processing using batchtools
EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
qtop (pronounced queue-top) is a tool written in order to monitor the state of Queueing Systems, along with related information relevant on HPC & grid clusters. At present it supports **PBS, SGE & OAR** families. There is a historic reference for the prior shell version of the tool, at former CERN source:
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
IBM LSF manual translation and practical experience
An information-theoretic pipeline for methylation analysis of WGBS data
Module to create DAG Task and Manage Task on SGE
Longbow is a tool for automating simulations on a remote HPC machine. Longbow is designed to mimic the normal way an application is run locally but allows simulations to be sent to powerful machines.
Utilities to support interacting with multiple HPC clusters
runjob is a program for managing a group of related jobs running on a compute cluster
xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from next-generation DNA sequencing data.
Grid Engine JSV (Job Submission Verifier) implementation for Go (#golang).
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