foldseek

Here are 4 public repositories matching this topic...

westlake-repl / SaProt

Saprot: Protein Language Model with Structural Alphabet (AA+3Di)

protein-structure protein representation-learning protein-sequence predicted-structures pretraining structure-aware protein-language-model alphafold2 foldseek structural-alphbet protein-llm

Updated Nov 1, 2024
Python

westlake-repl / ProTrek

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ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning

protein-annotation protein-alignment mmseqs2 protein-prediction contrastive-learning protein-language-model protein-pretraining foldseek sequence-structure

Updated Nov 1, 2024
Python

althonos / mini3di

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A NumPy port of the foldseek code for encoding protein structures to 3di.

protein-structure python-library numpy-library foldseek

Updated Oct 7, 2024
Python

cvigilv / ResidueFisher

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Bioinformatics protocol that aims at mining information at the sequence and structure level of protein chain to detect possible evolutionary conserved residues.

biology structural-biology bioinformatics-pipeline bioinformatics-analysis structural-bioin foldseek

Updated May 9, 2023
Python

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foldseek

Here are 4 public repositories matching this topic...

westlake-repl / SaProt

westlake-repl / ProTrek

althonos / mini3di

cvigilv / ResidueFisher

Improve this page

Add this topic to your repo