The GitHub repository for genomic data science is a collection of resources, tools, and code snippets for analyzing and interpreting genomic data.
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Updated
Jun 18, 2023 - Jupyter Notebook
The GitHub repository for genomic data science is a collection of resources, tools, and code snippets for analyzing and interpreting genomic data.
This repository contains the answers for coursera 's "Statistics for Genomic Data Science"
📉 Disk Storage of Compressed k-mer Dictionaries, with or without Random Access in Main Memory.
R script employed in the manuscript 'Genomic signatures of clonality in the deep water kelp Laminaria rodriguezii' to compute the distribution of FIS across loci into discrete classes
The bioinformatic analysis pipelines and scripts used for de novo genome assembly and analysis of filarial parasites Mansonella perstans and Mansonella ozzardi
simON-reads ("Simulate Oxford Nanopore Reads") is a simple yet powerful tool to generate fastq files containing MiniON-like long reads
FauxFlow - Analyze Single Cell Genomics Data in a Flow Cytometry Paradigm
Applying R and Bioconductor to assess DNA Methylation
Python tool built for a user-friendly interface for searching individual variants, batch queries, and exploring gene regions from the Ensembl database.
odd ratios estimator and likelihood of occurrence in geographical location
An open-source project to create a centralized hub for live streaming content.
A bash script for downloading sequence datasets from PlasmoDb, a Plasmodium informatics resource
Sup. Table 1 from Rodríguez-Gijón and Nuy et al., 2022 (Front. in Microbiology)
This repository streamlines the conversion of raw DNA sequencing data from FASTQ to BAM format, incorporating scripts that not only facilitate BAM conversion but also generate Sequence Alignment Map (SAM) files.
Manifestation of the Lottery Ticket Phenomena in supervised, reinforcement and unsupervised learning.
A comprehensive workflow for de novo assembly of whole-genome shotgun sequencing data using Velvet, followed by BLAST searches to analyze assembled contigs.
A python library to develop genomic data simulators
An analysis of SARS-CoV-2 genomic sequencing scenario in Brazil
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