Feature map and function annotation of Proteins
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Updated
Jun 13, 2024 - Python
Feature map and function annotation of Proteins
R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.
Assigns short human readable descriptions to biological sequences or gene families using references. For this, prot-scriber consumes sequence similarity search results in tabular format (Blast or Diamond).
Parse consecutive matches in BLAST results.
Unraveling Evolutionary Relationship between Fungi Species
A Linux command-line tool to extract homologous proteins from proteomes using DIAMOND.
PredGenesGetPepts is an easy-to-use, beginner-friendly pipeline to call genes from fasta files, retrieve peptides and blasting them against a given protein database
This repository contains my implementation, that I built from scratch, of the heuristic blast algorithm used for DNA or protein sequence search against a massive database.
Modeling chromosomal gene location by protein composition
BLAST without Sys.Call()
Using BLAST and Transdecoder.
Pipeline to get a protein's residues conservation JSD scores
Scripts to run benchmarks of BLAST and PLAST on a supercomputer
A comprehensive workflow for de novo assembly of whole-genome shotgun sequencing data using Velvet, followed by BLAST searches to analyze assembled contigs.
To classify plant ado-keto reductase-domain (PF00248) containing proteins via blastp search
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