A collection of awesome things regarding all omics.
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Updated
Jan 23, 2024
A collection of awesome things regarding all omics.
Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis
Project Manager for NGS data analysis
A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
Pipelines for NGS data preprocessing by the Bock lab and friends
Reconstruction and analysis of viral and host genomes at multi-organ level
A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
SARS-CoV-2 Genome Assembler
A simple fastp-MultiQC nextflow pipeline
A fast, easy way to present complex bioinformatics pipelines to biologists
FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2
Working example of snakemake tutorial using UAB Cheaha computing cluster via SLURM scheduler
Mapping, filtering, and data hub visualisation pipeline for DNase, ATAC, ChIP data
UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
command line and desktop tool for microbial variant calling
Protein Analysis and Classifier Toolkit
scripts associated with yam genome assembly
Archived code for analyses in "Extensive phylogenomic discordance and the complex evolutionary history of the Neotropical cat genus Leopardus" (Lescroart et al. 2023, MBE)
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