KEGG   PATHWAY: clv03030
Entry
clv03030                    Pathway                                
Name
DNA replication - Columba livia (rock pigeon)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
clv03030  DNA replication
clv03030

Organism
Columba livia (rock pigeon) [GN:clv]
Gene
110355541  SSBP1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
102096194  RNASEH1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
102089810  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
102086478  PCNA; proliferating cell nuclear antigen [KO:K04802]
102093637  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
102092982  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
102093437  POLA1; DNA polymerase alpha catalytic subunit isoform X1 [KO:K02320] [EC:2.7.7.7]
102085956  PRIM1; LOW QUALITY PROTEIN: DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
102087524  PRIM2; DNA primase large subunit [KO:K02685]
106146056  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
102088531  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
102087575  POLE; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
102086528  POLE2; DNA polymerase epsilon subunit 2 isoform X3 [KO:K02325] [EC:2.7.7.7]
102096962  POLE4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
102087349  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
102089108  MCM3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
102098866  LOW QUALITY PROTEIN: DNA replication licensing factor mcm4 [KO:K02212] [EC:5.6.2.3]
102085083  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
102089573  MCM6; LOW QUALITY PROTEIN: DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
102091451  RPA2; replication protein A 32 kDa subunit [KO:K10739]
102096222  RPA3; replication protein A 14 kDa subunit [KO:K10740]
102084834  RFC1; replication factor C subunit 1 [KO:K10754]
102090389  RFC2; replication factor C subunit 2 [KO:K10755]
102087583  RFC4; replication factor C subunit 4 [KO:K10755]
102091421  RFC3; replication factor C subunit 3 [KO:K10756]
102098288  RFC5; replication factor C subunit 5 [KO:K10756]
102090758  RNASEH2B; ribonuclease H2 subunit B isoform X1 [KO:K10744]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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