KEGG   PATHWAY: mvt00020
Entry
mvt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mammaliicoccus vitulinus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mvt00020  Citrate cycle (TCA cycle)
mvt00020

Module
mvt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mvt00020]
mvt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mvt00020]
mvt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mvt00020]
mvt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mvt00020]
mvt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mvt00020]
Other DBs
GO: 0006099
Organism
Mammaliicoccus vitulinus [GN:mvt]
Gene
I6J10_05965  citrate synthase [KO:K01659] [EC:2.3.3.5]
I6J10_04160  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
I6J10_05960  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
I6J10_04510  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
I6J10_04505  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
I6J10_02655  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I6J10_05010  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I6J10_03840  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
I6J10_03845  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
I6J10_03410  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
I6J10_03405  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
I6J10_02920  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
I6J10_02925  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
I6J10_02915  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
I6J10_06735  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
I6J10_05955  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
I6J10_04245  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
I6J10_10355  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
I6J10_02745  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
I6J10_06520  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
I6J10_02640  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
I6J10_02645  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
I6J10_02650  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mvt00010  Glycolysis / Gluconeogenesis
mvt00053  Ascorbate and aldarate metabolism
mvt00061  Fatty acid biosynthesis
mvt00071  Fatty acid degradation
mvt00190  Oxidative phosphorylation
mvt00220  Arginine biosynthesis
mvt00250  Alanine, aspartate and glutamate metabolism
mvt00280  Valine, leucine and isoleucine degradation
mvt00350  Tyrosine metabolism
mvt00470  D-Amino acid metabolism
mvt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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