WO2014126954A1 - Regioselective synthesis of substituted pyrimidines - Google Patents

Regioselective synthesis of substituted pyrimidines Download PDF

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Publication number
WO2014126954A1
WO2014126954A1 PCT/US2014/015925 US2014015925W WO2014126954A1 WO 2014126954 A1 WO2014126954 A1 WO 2014126954A1 US 2014015925 W US2014015925 W US 2014015925W WO 2014126954 A1 WO2014126954 A1 WO 2014126954A1
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Prior art keywords
compound
optionally substituted
formula
triazol
basic conditions
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PCT/US2014/015925
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French (fr)
Inventor
Arlindo L. Castelhano
Josef A. Rechka
Chandrawansha Senanayake
Krishnaswamy DEVANATHAN
Karunanidhi GNANAVELU
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OSI Pharmaceuticals, LLC
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Publication of WO2014126954A1 publication Critical patent/WO2014126954A1/en

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D403/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00
    • C07D403/02Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00 containing two hetero rings
    • C07D403/04Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00 containing two hetero rings directly linked by a ring-member-to-ring-member bond
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D403/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00
    • C07D403/14Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00 containing three or more hetero rings

Definitions

  • the present invention pertains at least in part to chemical compounds, substituted pyrimidines, including intermediates, and to chemical synthesis, and regioselective chemical synthesis.
  • the compounds and syntheses can be useful, for example, in connection with the preparation of biologically active compounds.
  • the present invention concerns compounds of general Formula I , as shown below, and methods of preparing the compounds, which can be useful in application such as pharmaceutical intermediates.
  • the inventio d of Formula I or a salt thereof:
  • Ri is F or is selected from halogen, OH, or -NR 2 R3;
  • R 1 is a leaving group such as alkyl or aryl sulfonate, or alkyl or aryl sulfinate;
  • R 2 and R 3 are independently H , optionally substituted Ci-i 2 aliphatic, or optionally substituted 4-iocyclic, except R 2 and R 3 are not both H;
  • R 2 and R 3 together with the N to which they are attached, form an optionally substituted 4 -iocyclic.
  • each R 4 is 1 ,2,3-triazol-1 -yl or 1 ,2,4-triazol-1 -yl, either of which is optionally substituted;
  • R 5 is -CF 3 , -CN, halogen , or Ci_ 3 aliphatic.
  • the invention includes a process for preparing a compound of Formula I I I , according to the scheme:
  • the invention includes a process for preparing compounds of Formula IV accordin
  • the hydrolyzing is regioselective.
  • the basic conditions are aqueous basic conditions.
  • the basic conditions include at least one of pyridine, DIPEA, or lutidine.
  • the basic conditions include pyridine.
  • the process is carried out at about 90-100 °C.
  • IV is isolated by evaporating the reaction mixture, slurrying the crude product in an alcohol or alcohol mixture, and separating the liquid.
  • IV is obtained in a purity of about 98% or greater. In some aspects thereof, IV is obtained in an amount of about 1 kg or more per reaction. In some aspects thereof, IV is obtained from III in a yield of about 70% or more.
  • the invention includes a process for preparing a compound of Formula V according to t
  • the invention includes chlorinating with POCI 3 .
  • the chlorination is carried out in the presence of catalytic phosphoric acid or DMF.
  • V is obtained from IV in a purity of about 98% or greater. In some aspects thereof, V is obtained in an amount of about 1 kg or more. In some aspects thereof, V is obtained from IV in a yield of about 65% or more.
  • the invention includes a process for preparing a compound of Formula I, wherein R 1 is -NR 2 R 3 (Formula VI), comprising reacting III or V with a compound of the formula NHR2R3.
  • the invention includes a process of treating a compound of Formula VI with an amine NHR 6 R 7 , such as an aniline, to obtain a compound of Formula VII:
  • R 6 and R 7 are independently defined as in R 2 and R 3 of Formula I.
  • the compounds of the Formula I may be prepared by the methods described below, together with synthetic methods known in the art of organic chemistry, or modifications and derivatizations that are familiar to those of ordinary skill in the art.
  • the starting materials used herein are commercially available or may be prepared by routine methods known in the art (such as those methods disclosed in standard reference books such as the COMPENDIUM OF ORGANIC SYNTHETIC METHODS, Vol. I-VI (published by Wiley-lnterscience)). Preferred methods include those described below.
  • any of the following synthetic sequences it may be necessary and/or desirable to protect sensitive or reactive groups on any of the molecules concerned. This can be achieved by means of conventional protecting groups, such as those described in T. W. Greene, Protective Groups in Organic Synthesis, John Wiley & Sons, 1981 ; T.W. Greene and P.G.M. Wuts, Protective Groups in Organic Synthesis, John Wiley & Sons, 1991 , and T. W. Greene and P.G.M. Wuts, Protective Groups in Organic Synthesis, John Wiley & Sons, 1999, which are hereby incorporated by reference.
  • conventional protecting groups such as those described in T. W. Greene, Protective Groups in Organic Synthesis, John Wiley & Sons, 1981 ; T.W. Greene and P.G.M. Wuts, Protective Groups in Organic Synthesis, John Wiley & Sons, 1991 , and T. W. Greene and P.G.M. Wuts, Protective Groups in Organic Synthesis
  • the present invention concerns compounds of general Formula I, as shown below, and methods of preparing the compounds, which can be useful in application such as pharmaceutical intermediates.
  • the invention includes a compound of Formula la, or a salt thereof, wherein:
  • Ri is selected from halogen, -OH, _ or -NR 2 R3;
  • R 2 and R 3 are independently H, optionally substituted Ci_ 12 aliphatic, or optionally substituted 4 -iocyclic, except R 2 and R 3 are not both H;
  • R 2 and R 3 together with the N to which they are attached, form an optionally substituted 4 -iocyclic.
  • the invention includes a compound of Formula la, wherein Ri is
  • the invention includes a compound of Formula I, described above, wherein: R 1 and R 4 are 1 ,2,3-triazol-1-yl or 1 ,2,4-triazol-1-yl; and R 5 is -CF 3 . In some aspects, the invention includes Compound 3.
  • the invention includes a compound of Formula I, described above, wherein: R 1 is 1 ,2,3-triazol-1-yl or 1 ,2,4-triazol-1-yl; R 4 is OH; and R 5 is -CF 3 . In some aspects, the invention includes Compound 4.
  • the invention includes a compound of Formula I, described above, wherein: R 1 is 1 ,2,3-triazol-1-yl or 1 ,2,4-triazol-1-yl; R 4 is CI; and R 5 is -CF 3 . In some aspects, the invention includes Compound 5.
  • 5-trifluoromethyluracil (Compound 2 herein) is disclosed in published literature. It can be prepared by known methods, such as disclosed in Heidelberger et al., JACS, 84, 3597-98 (1962), and US7884202, example 1 thereof, which are incorporated herein by this reference. Also known are halouracils such as 5-chlorouracil.
  • the invention includes a process for preparing Compound 3 of Formula I, according to
  • Compound 3 (2,4-bis[1 ,2,4]triazol-1-yl-5-trifluoromethyl-pyrimidine) can be prepared from Compound 2 basically according to literature procedures.
  • Compound 2 is treated with phosphorous oxychloride (POCI 3 ) and 1 ,2,4-triazole.
  • POCI 3 phosphorous oxychloride
  • 1 ,2,4-triazole See, e.g., Webb et al., Nucl. Acid. Res., 14, 7661-74 (1986), which is incorporated herein by this reference. The skilled artisan can vary and further optimize particular conditions as desired.
  • a base such as Et 3 N is used, which in some embodiments can be included in an amount of about 5 or more, 10 or more, or 15 or more eq.
  • the reaction can be carried out in a suitable solvent, which is not limited, such as CH 2 CI 2 and/or CH 3 CN. In some embodiments, the reaction is carried out at about 0-5 °C. In some embodiments, the reaction is carried out at a scale of about 1 kg or more of starting Compound 2. In some embodiments, the yield of Compound 3 is about 85% or greater.
  • a suitable solvent which is not limited, such as CH 2 CI 2 and/or CH 3 CN.
  • the reaction is carried out at about 0-5 °C.
  • the reaction is carried out at a scale of about 1 kg or more of starting Compound 2. In some embodiments, the yield of Compound 3 is about 85% or greater.
  • the invention includes a process for preparing Compound 4 (2-
  • the basic conditions are aqueous basic conditions.
  • the basic conditions include at least one amine based such as pyridine, DIPEA, DMAP, Et 3 N, NMP, or lutidine.
  • the basic conditions include pyridine.
  • the basic conditions include one or more of NaOH or LiOH.
  • the process is carried out with heating, such as at about 40- 100, 60-100, or about 90-100 °C.
  • Compound 4 is isolated by evaporating the reaction mixture, slurrying the crude product in an alcohol or alcohol mixture, and separating the liquid.
  • the separating may be by filtration.
  • Compound 4 is obtained in a purity of about 90% or greater, 95 or greater, or 98% or greater. In some aspects thereof, Compound 4 is obtained in an amount of about 1 kg or more or about 5 kg or more per reaction. In some aspects thereof, Compound 4 is obtained from Compound 3 in a yield of about 60% or more, 70% or more, 80% or more, or 90% or more.
  • the invention includes a process for preparing Compound 5 (4-chloro- 2-[1 ,2,4]tria
  • the invention includes chlorinating with POCI3. In some aspects thereof, the chlorination is carried out in the presence of catalytic phosphoric acid or DMF.
  • Compound 5 is obtained from Compound 4 in a purity of about 90% or more, 95% or more, 98% or more. In some aspects thereof, Compound 5 is obtained in an amount of about 1 kg or more or 5 kg or more. In some aspects thereof, Compound 5 is obtained from Compound 4 in a yield of about 65% or more, 75% or more, or 85% or more. In some aspects, the invention includes a process for preparing a compound of Formula
  • R 5 is -CF 3 , comprising reacting Compound 3 or Compound 5 with a compound of the formula NHR 2 R 3 .
  • R 2 and R 3 are not limited by the representative possibilities described above.
  • the invention includes a process of treating a compound of Formula VI, wherein R 5 is -CF 3 , with an amine NHR 6 R 7 , such as an aniline, to obtain a compound of the formula:
  • R 6 and R 7 are independently H, optionally substituted Ci_i 2 aliphatic, or optionally substituted 4 -i 0 cyclic, except R 6 and R 7 are not both H; or R 6 and R 7 , together with the N to which they are attached, form an optionally substituted 4 -i 0 cyclic.
  • N-methyl-2- ⁇ [2-(1 /-/-1 , 2, 4-triazol-1 - yl)-5- (trifluoromethyl) pyrimidin-4-yl] amino ⁇ benzamide Compound 6, 0.200 g, 0.550 mmol
  • 2-methoxy-4-methyl aniline 0.083 g, 0.606 mmol, 1 .1 eq.
  • trimethylacetic acid (1 .0 g, 9.791 mmol, 17.8 eq.
  • Formula I include any combination of such variables or variable subsets.
  • the invention includes the compounds and salts thereof, and their physical forms, preparation of the compounds.
  • the compounds of the invention and term "compound” in the claims include any pharmaceutically acceptable salts or solvates, and any amorphous or crystal forms, or tautomers, whether or not specifically recited in context.
  • a recitation of a compound herein is open to and embraces any material or composition containing the recited compound (e.g., a composition containing a racemic mixture, tautomers, epimers, stereoisomers, impure mixtures, etc.).
  • a salt, solvate, or hydrate, polymorph, or other complex of a compound includes the compound itself, a recitation of a compound embraces materials containing such forms. Isotopically labeled compounds are also encompassed except where specifically excluded.
  • hydrogen is not limited to hydrogen containing zero neutrons.
  • substituted and substitutions contained in formulas herein refer to the replacement of one or more hydrogen radicals in a given structure with a specified radical, or, if not specified, to the replacement with any chemically feasible radical.
  • substituents can be either the same or different at every position (independently selected) unless otherwise indicated.
  • two positions in a given structure can be substituted with one shared substituent. It is understood that chemically impossible or highly unstable configurations are not desired or intended, as the skilled artisan would appreciate.
  • C b meaning that the moiety can contain any number of from “a” to “b” carbon atoms.
  • C 0 alkyl means a single covalent chemical bond when it is a connecting moiety, and a hydrogen when it is a terminal moiety.
  • x-y can indicate a moiety containing from x to y atoms, e.g., 5 . eheterocycloalkyl means a heterocycloalkyl having either five or six ring members.
  • C x . y may be used to define number of carbons in a group.
  • Co- V alkyr means alkyl having 0-12 carbons, wherein C 0 alkyl means a single covalent chemical bond when a linking group and means hydrogen when a terminal group.
  • heteroarylthioCi_ 4 alkyl is a heteroaryl group connected through a thio sulfur to a Ci-4 alkyl, which alkyl connects to the chemical species bearing the substituent.
  • aliphatic means any hydrocarbon moiety, and can contain linear, branched, and cyclic parts, and can be saturated or unsaturated.
  • alkyl means any saturated hydrocarbon group that is straight-chain or branched. Examples of alkyl groups include methyl, ethyl, propyl, 2-propyl, n-butyl, iso-butyl, tert-butyl, pentyl, and the like.
  • cyclic means any ring system with or without heteroatoms (N, O, or S(O) 0 - 2 ), and which can be saturated or unsaturated. Ring systems can be bridged and can include fused rings. The size of ring systems may be described using terminology such as " x . y cyclic," which means a cyclic ring system that can have from x to y ring atoms.
  • g-iocarbocyclic means a 5,6 or 6,6 fused bicyclic carbocyclic ring system which can be satd., unsatd. or aromatic. It also means a phenyl fused to one 5 or 6 membered satd. or unsatd. carbocyclic group. Nonlimiting examples of such groups include naphthyl, 1 ,2,3,4 tetrahydronaphthyl, indenyl, indanyl, and the like.
  • halo or halogen means fluoro, chloro, bromo, or iodo.
  • protecting group means a suitable chemical group that can be attached to a functional group and removed at a later stage to reveal the intact functional group. Examples of suitable protecting groups for various functional groups are described in T.W. Greene and P.G.M. Wuts, Protective Groups in Organic Synthesis, 2d Ed., John Wiley and Sons (1991 and later editions); L. Fieser and M. Fieser, Fieser and Fieser's Reagents for Organic Synthesis, John Wiley and Sons (1994); and L. Paquette, ed. Encyclopedia of Reagents for Organic Synthesis, John Wiley and Sons (1995).
  • hydroxy protecting group as used herein, unless otherwise indicated, includes Ac, CBZ, and various hydroxy protecting groups familiar to those skilled in the art including the groups referred to in Greene.

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Abstract

Disclosed are compounds of the Formula I:(I) where R1, R4, and R5 are described herein, and methods of making the compounds, including regioselective functionalization.

Description

REGIOSELECTIVE SYNTHESIS OF SUBSTITUTED PYRIMIDINES
FIELD AND BACKGROUND
The present invention pertains at least in part to chemical compounds, substituted pyrimidines, including intermediates, and to chemical synthesis, and regioselective chemical synthesis. The compounds and syntheses can be useful, for example, in connection with the preparation of biologically active compounds.
Syntheses of diaminopyrimindes has been described in US7122670 and in publications cited therein. See also Xu et al. , J. Org. C em. , 57, 3839-3845 ( 1992).
SUMMARY
In some aspects, the present invention concerns compounds of general Formula I , as shown below, and methods of preparing the compounds, which can be useful in application such as pharmaceutical intermediates.
In some aspects, the inventio d of Formula I , or a salt thereof:
Figure imgf000002_0001
wherein:
Ri is F or is selected from halogen, OH, or -NR2R3;
or R1 is a leaving group such as alkyl or aryl sulfonate, or alkyl or aryl sulfinate;
R2 and R3 are independently H , optionally substituted Ci-i2aliphatic, or optionally substituted 4-iocyclic, except R2 and R3 are not both H;
or R2 and R3, together with the N to which they are attached, form an optionally substituted 4-iocyclic.
each R4 is 1 ,2,3-triazol-1 -yl or 1 ,2,4-triazol-1 -yl, either of which is optionally substituted; and
R5 is -CF3, -CN, halogen , or Ci_3aliphatic.
In some aspects, the invention includes a process for preparing a compound of Formula I I I , according to the scheme:
Figure imgf000003_0001
III
comprising reacting Compound II with triazole in the presence of POCI3.
In some aspects, the invention includes a process for preparing compounds of Formula IV accordin
Figure imgf000003_0002
III IV
comprising hydrolyzing a compound of Formula III under basic conditions. In some embodiments, the hydrolyzing is regioselective.
In some aspects thereof, the basic conditions are aqueous basic conditions. In some aspects thereof, the basic conditions include at least one of pyridine, DIPEA, or lutidine. In some aspects thereof, the basic conditions include pyridine.
In some aspects thereof, the process is carried out at about 90-100 °C.
In some aspects thereof, IV is isolated by evaporating the reaction mixture, slurrying the crude product in an alcohol or alcohol mixture, and separating the liquid.
In some aspects thereof, IV is obtained in a purity of about 98% or greater. In some aspects thereof, IV is obtained in an amount of about 1 kg or more per reaction. In some aspects thereof, IV is obtained from III in a yield of about 70% or more.
In some aspects, the invention includes a process for preparing a compound of Formula V according to t
Figure imgf000003_0003
IV v
comprising chlorinating Compound IV.
In some aspects thereof, the invention includes chlorinating with POCI3. In some aspects thereof, the chlorination is carried out in the presence of catalytic phosphoric acid or DMF. In some aspects thereof, V is obtained from IV in a purity of about 98% or greater. In some aspects thereof, V is obtained in an amount of about 1 kg or more. In some aspects thereof, V is obtained from IV in a yield of about 65% or more.
In some aspects, the invention includes a process for preparing a compound of Formula I, wherein R1 is -NR2R3 (Formula VI), comprising reacting III or V with a compound of the formula NHR2R3.
Figure imgf000004_0001
VI
In some aspects, the invention includes a process of treating a compound of Formula VI with an amine NHR6R7, such as an aniline, to obtain a compound of Formula VII:
Figure imgf000004_0002
VII
wherein R6 and R7 are independently defined as in R2 and R3 of Formula I.
DETAILED DESCRIPTION
The compounds of the Formula I may be prepared by the methods described below, together with synthetic methods known in the art of organic chemistry, or modifications and derivatizations that are familiar to those of ordinary skill in the art. The starting materials used herein are commercially available or may be prepared by routine methods known in the art (such as those methods disclosed in standard reference books such as the COMPENDIUM OF ORGANIC SYNTHETIC METHODS, Vol. I-VI (published by Wiley-lnterscience)). Preferred methods include those described below.
During any of the following synthetic sequences it may be necessary and/or desirable to protect sensitive or reactive groups on any of the molecules concerned. This can be achieved by means of conventional protecting groups, such as those described in T. W. Greene, Protective Groups in Organic Synthesis, John Wiley & Sons, 1981 ; T.W. Greene and P.G.M. Wuts, Protective Groups in Organic Synthesis, John Wiley & Sons, 1991 , and T. W. Greene and P.G.M. Wuts, Protective Groups in Organic Synthesis, John Wiley & Sons, 1999, which are hereby incorporated by reference.
Compounds of Formula I, or their pharmaceutically acceptable salts, can be prepared according to the reaction Schemes discussed hereinbelow and the general skill in the art. Unless otherwise indicated, the substituents in the Schemes are defined as above. Isolation and purification of the products is accomplished by standard procedures, which are known to a chemist of ordinary skill.
When a general or exemplary synthetic procedure is referred to, one skilled in the art can readily determine the appropriate reagents, if not indicated, extrapolating from the general or exemplary procedures. Some of the general procedures are given as examples for preparing specific compounds. One skilled in the art can readily adapt such procedures to the synthesis of other compounds. Representation of an unsubstituted position in structures shown or referred to in the general procedures is for convenience and does not preclude substitution as described elsewhere herein. For specific groups that can be present, either as R groups in the general procedures or as optional substituents not shown, refer to the descriptions in the remainder of this document, including the claims, summary and detailed description.
In some aspects, the present invention concerns compounds of general Formula I, as shown below, and methods of preparing the compounds, which can be useful in application such as pharmaceutical intermediates.
In some aspects, the invention includes a compound of Formula la, or a salt thereof, wherein:
Figure imgf000005_0001
la
Ri is selected from halogen, -OH,
Figure imgf000005_0002
_ or -NR2R3; and
R2 and R3 are independently H, optionally substituted Ci_12aliphatic, or optionally substituted 4-iocyclic, except R2 and R3 are not both H;
or R2 and R3, together with the N to which they are attached, form an optionally substituted 4-iocyclic.
In some aspects, the invention includes a compound of Formula la, wherein Ri is
selected from halogen, -OH, or
Figure imgf000005_0003
In some aspects, the invention includes a compound of Formula I, described above, wherein: R1 and R4 are 1 ,2,3-triazol-1-yl or 1 ,2,4-triazol-1-yl; and R5 is -CF3. In some aspects, the invention includes Compound 3.
In some aspects, the invention includes a compound of Formula I, described above, wherein: R1 is 1 ,2,3-triazol-1-yl or 1 ,2,4-triazol-1-yl; R4 is OH; and R5 is -CF3. In some aspects, the invention includes Compound 4.
In some aspects, the invention includes a compound of Formula I, described above, wherein: R1 is 1 ,2,3-triazol-1-yl or 1 ,2,4-triazol-1-yl; R4 is CI; and R5 is -CF3. In some aspects, the invention includes Compound 5.
5-trifluoromethyluracil (Compound 2 herein) is disclosed in published literature. It can be prepared by known methods, such as disclosed in Heidelberger et al., JACS, 84, 3597-98 (1962), and US7884202, example 1 thereof, which are incorporated herein by this reference. Also known are halouracils such as 5-chlorouracil.
In some aspects, the invention includes a process for preparing Compound 3 of Formula I, according to
Figure imgf000006_0001
comprising reacting Compound 2 with 1 ,2,4-triazole in the presence of POCI3.
Compound 3 (2,4-bis[1 ,2,4]triazol-1-yl-5-trifluoromethyl-pyrimidine) can be prepared from Compound 2 basically according to literature procedures. In some embodiments, Compound 2 is treated with phosphorous oxychloride (POCI3) and 1 ,2,4-triazole. See, e.g., Webb et al., Nucl. Acid. Res., 14, 7661-74 (1986), which is incorporated herein by this reference. The skilled artisan can vary and further optimize particular conditions as desired.
In some embodiments, about 5 or more, 10 or more, or 15 or more eq. of 1 ,2,4-triazole are used. In some embodiments, about 2 or more, 4 or more, or 6 or more eq. of POCI3 are used. In some embodiments, a base such as Et3N is used, which in some embodiments can be included in an amount of about 5 or more, 10 or more, or 15 or more eq.
The reaction can be carried out in a suitable solvent, which is not limited, such as CH2CI2 and/or CH3CN. In some embodiments, the reaction is carried out at about 0-5 °C. In some embodiments, the reaction is carried out at a scale of about 1 kg or more of starting Compound 2. In some embodiments, the yield of Compound 3 is about 85% or greater.
In some aspects, the invention includes a process for preparing Compound 4 (2-
[1 ,2,4]triazol-1-yl-5-trifluoromethyl-pyrimidin-4-ol) according to the scheme:
Figure imgf000007_0001
comprising hydrolyzing Compound 3 under basic conditions.
In some aspects thereof, the basic conditions are aqueous basic conditions. In some aspects thereof, the basic conditions include at least one amine based such as pyridine, DIPEA, DMAP, Et3N, NMP, or lutidine. In some aspects thereof, the basic conditions include pyridine. In some aspects, the basic conditions include one or more of NaOH or LiOH.
In some aspects thereof, the process is carried out with heating, such as at about 40- 100, 60-100, or about 90-100 °C.
In some aspects thereof, Compound 4 is isolated by evaporating the reaction mixture, slurrying the crude product in an alcohol or alcohol mixture, and separating the liquid. The separating may be by filtration.
In some aspects thereof, Compound 4 is obtained in a purity of about 90% or greater, 95 or greater, or 98% or greater. In some aspects thereof, Compound 4 is obtained in an amount of about 1 kg or more or about 5 kg or more per reaction. In some aspects thereof, Compound 4 is obtained from Compound 3 in a yield of about 60% or more, 70% or more, 80% or more, or 90% or more.
In some aspects, the invention includes a process for preparing Compound 5 (4-chloro- 2-[1 ,2,4]tria
Figure imgf000007_0002
comprising chlorinating Compound 4.
In some aspects thereof, the invention includes chlorinating with POCI3. In some aspects thereof, the chlorination is carried out in the presence of catalytic phosphoric acid or DMF.
In some aspects thereof, Compound 5 is obtained from Compound 4 in a purity of about 90% or more, 95% or more, 98% or more. In some aspects thereof, Compound 5 is obtained in an amount of about 1 kg or more or 5 kg or more. In some aspects thereof, Compound 5 is obtained from Compound 4 in a yield of about 65% or more, 75% or more, or 85% or more. In some aspects, the invention includes a process for preparing a compound of Formula
VI, wherein R5 is -CF3, comprising reacting Compound 3 or Compound 5 with a compound of the formula NHR2R3. R2 and R3 are not limited by the representative possibilities described above.
In some aspects, the invention includes a process of treating a compound of Formula VI, wherein R5 is -CF3, with an amine NHR6R7, such as an aniline, to obtain a compound of the formula:
Figure imgf000008_0001
wherein R6 and R7 are independently H, optionally substituted Ci_i2aliphatic, or optionally substituted 4-i0cyclic, except R6 and R7 are not both H; or R6 and R7, together with the N to which they are attached, form an optionally substituted 4-i0cyclic.
EXPERIMENTAL
Example 1 :
Figure imgf000008_0002
To a suspension of 1 ,2,4-triazole (Compound 2) (1 .44 kg, 20.82 mol) in dichloromethane (6.25 L) was added phosphorous oxychloride (450 mL, 4.88 mol) over 30 min at 0-5 °C. After complete addition of POCI3, triethylamine (2.9 L, 20.82 mol) was added at 0-5 °C slowly over a period of 3 h. After complete addition of triethylamine, the reaction mixture was stirred at 0-5 °C for 1 h. After 1 h, 5-trifluoromethyl uracil (250 g, 1 .38 mol) was added in lots (50 g x 5) over a period of 30 min at 0-5 °C. After complete addition of 5-trifluoromethyl uracil, the reaction mixture was allowed to reach 23-25 °C and stirred for 16 h. Reaction completion was monitored by TLC (solvent system: 80 % ethyl acetate in pet ether). After completion, the reaction mixture was diluted with dichloromethane (10 L) and washed with water (6 L x 4). Aqueous layer was back extracted with dichloromethane (3 L x 2) and the combined organic extracts were dried over sodium sulfate, filtered and concentrated to get the crude product as yellow solid (400g). The crude product was slurried with 2-propanol (750 mL) for 1 h, filtered, and the filtered cake was washed with 2-propanol (250 mL). The off-white obtained was dried under vacuum to get Compound 3. Yield: 340 g (87 %); HPLC 99.6% area, Rt = 9.18 min; purity: > 98%; MS (M+1 ) 283 amu; 1H NMR {c/6-DMSO}: 5(ppm) 9.92 (s, 1 H), 9.91 (s, 1 H), 9.55 (s, 1 H), 8.55 (s, 1 H), 8.47 (s, 1 H).
Example 2:
Figure imgf000009_0001
A suspension of Compound 3 (100 g, 0.354 mol) in pyridine (140 ml) and water (500 ml) was heated to 95-100 °C for 10 h (reaction mixture becomes a clear solution). Reaction completion was monitored by TLC (100% ethyl acetate). After completion of reaction, the reaction mixture was evaporated to get the yellow solid (1 15g). The crude product was slurried with 300 mL of 30% methanol/ethanol for 6 h at 25 °C, filtered, and the solid was washed with 80 mL of 30% methanol/ethanol. The pale yellow solid thus obtained was dried under vacuum at 25 °C to get pure product Compound 4. Yield: (65 g; 78 %); HPLC 96.3% area, Rt = 8.35 min, purity: > 97%; 1H NMR {c/6-DMSO}: δ (ppm) 9.43 (s, 1 H), 8.66 (s, 1 H), 8.41 (s, 1 H); MS: (M+1 ) 232 amu.
Example 3:
Figure imgf000009_0002
To a cooled (0 °C) suspension of Compound 4 (650 g, 2.81 mol) in phosphorous oxychloride (980 ml) was added phosphoric acid (27ml), followed by diisopropyl ethylamine drop wise over a period of 30min, at 0-5 °C. After complete addition of diisopropyl ethylamine, the temperature of the reaction mixture was adjusted to 25 °C and then it was heated to 100 °C for 30 min. Reaction completion was monitored by TLC (80% ethyl acetate in pet ether). TLC showed no starting material. After completion of the reaction, ethyl acetate (3L) was added and the mixture was poured in to ice cold water (2L). The layers were separated and the aqueous layer was extracted with ethyl acetate (3 x 750 mL). The combined organic solutions were washed with saturated sodium bicarbonate solution (2 x 250 mL), water (2 x 500 mL) and brine (500 mL). The aqueous layer was back extracted with ethyl acetate (2 x 250 ml_).The combined organic solutions were dried over sodium sulfate and concentrated to get the crude product as a pale brown solid. The crude product (610 g) was slurried with a mixture of 610 mL of ethanol and 915 mL of pet ether for 30 min at 25 °C. The pale yellow solid was collected by filtration and was dried under vacuum at 25 °C to give Compound 5. Yield: 460g, 65 %; HPLC purity: > 98 %.
Example 4:
Figure imgf000010_0002
To a suspension of Compound 4 (500 g, 2.16 mol) in toluene (10L) was added POCI3
(405 mL, 663 g) slowly at 23-25 °C and then DMF (50ml) was added slowly at 23-25 °C. After complete addition, the reaction mixture was heated to 100 °C for 1 h. (HPLC showed absence of starting materials). After completion of the reaction the reaction mass was allowed to warm to 15-20 °C and was then quenched with ice cold water (5L) at 15-20 °C. The toluene layer was separated, then aqueous layer was extracted with ethyl acetate (5L x 3). The combined toluene and ethyl acetate solutions were washed with sodium bicarbonate solution (5 L), and brine solution (2 L). The combined aqueous solutions were extracted with ethyl acetate (3 L) and the combined organic layers were dried over sodium sulfate then concentrated to give a pale yellow solid (432g, 94% purity). The crude material was slurried with a mixture of ethanol (250 mL) and hexane (375 mL) at 23-25 °C for 30 min. The solid was collected by filtration, washed with hexane (100 mL) and dried to give Compound 5 as a pale yellow solid.
Yield: 350g, 65%; purity: 99% by HPLC, 98.8% area, Rt = 10.04 min; 1H NMR {CDCI3}: δ (ppm) 9.30 (s, 1 H), 8.03 (s, 1 H), 8.25 (s, 1 H); MS: (M+1 ) 250 amu. Example 5
Figure imgf000010_0001
To a sealed tube with a magnet was added 4-chloro-2-(1 /-/-1 ,2,4-triazol-1-yl)-5-
(trifluoromethyl)pyrimidine (0.050 g, 0.200 mmol), and 2-propanol (0.5 ml_). To the reaction mixture 2-amino-/V-methylbenzamide (0.030 g, 0.20 mmol) and DIPEA (0.067 ml_, 0.40 mmol) were added and to the mixture was stirred in an oil bath at 90 °C. The progress of the reaction was monitored by HPLC. After reaction completion, the suspension was allowed to cool to RT and diluted with water (1 ml_) and 2-propanol (1 ml_) and stirred. The product was collected by filtration, washed with water and 2-propanol then dried under vacuum to give 60 mg of Compound 6 (N-methyl-2-{[2-(1 /-/-1 ,2,4-triazol-1-yl)-5-(trifluoromethyl)pyrimidin-4- yl]amino}benzamide).
Analytical: HPLC: 99.1 % area, R, = 6.66 min; 1H NMR {CDC/3}: 5(ppm) 1 1.68(br s, 1 H, NH), 9.13 (s, 1 H, ArH), 8.66 (s, 1 H, ArH), 8.60 (d, J = 7.8 Hz, 1 H, ArH), 8.17 (s, 1 H), 7.62 (t, J = 7.1 Hz, 1 H, ArH), 7.55 (d, J = 7.8 Hz, 1 H, ArH), 7.23 (t, J = 7.5 Hz, 1 H, ArH), 6.29 (br s, 1 H, NH), 3.05 (s, 3 H, CH3).
Example 6
Figure imgf000011_0001
To a 3 N 500 ml_ RBF with a mechanical stirrer, a thermocouple and a reflux condenser with a N2 inlet was added 2,4-di-(1 /-/-1 ,2,4-triazol-1-yl)-5-(trifluoromethyl)pyrimidine (10.00 g, 35.44 mmol), 2-amino-/V-methylbenzamide (7.983 g, 53.16 mmol) and THF (200 ml_). The resulting suspension was cooled using a dry ice/2-propanol bath and 2 M trimethylaluminum in toluene (28.35 ml_, 56.70 mmol) was added using a syringe over 10 min. while maintaining the temperature below -30 °C. After the addition was complete, the pale yellow suspension was slowly allowed to warm and was heated to 60 °C. The progress of the reaction was monitored by HPLC. After reaction completion, the suspension was allowed to cool to RT and further cooled using a water/ice bath. An aqueous solution of ammonium chloride (28% w/w, 80 mL) was added using an addition funnel at 0-5 °C over 5 min. The resulting suspension was stirred at RT and the solid was collected by filtration, rinsed with water (2 X 20 mL), toluene (20 mL) and methanol (20 mL). Solid was suspended in 2% aqueous NaOH (200 mL) and stirred at RT, then collected by filtration. After washing with water (3 X 20 mL) the damp solid was dried under vacuum ~ 40 °C to give 10.6 g of Compound 6.
Analytical: HPLC: 98.8% area, R, = 6.66 min; 1H NMR {CDC/3}: 5(ppm) 1 1.68(br s, 1 H, NH), 9.13 (s, 1 H, ArH), 8.66 (s, 1 H, ArH), 8.61 (d, J = 8.3 Hz, 1 H, ArH), 8.17 (s, 1 H), 7.62 (t, J = 7.3 Hz, 1 H, ArH), 7.54 (d, J = 7.8 Hz, 1 H, AsH), 7.22 (t, J = 7.6 Hz, 1 H, ArH), 6.29 (br s, 1 H, NH), 3.05 (s, 3 H, CH3).
Example 7 (2-({2-[(2-Methoxy-4-methylphenyl)amino]-5-(trifluoromethyl)pyrimidin-4-yl}amin N-methylbenzamide)
Figure imgf000012_0001
To a test tube with a magnet stirrer bar was added N-methyl-2-{[2-(1 /-/-1 , 2, 4-triazol-1 - yl)-5- (trifluoromethyl) pyrimidin-4-yl] amino} benzamide (Compound 6, 0.200 g, 0.550 mmol) and 2-methoxy-4-methyl aniline (0.083 g, 0.606 mmol, 1 .1 eq.). To the mixture, trimethylacetic acid (1 .0 g, 9.791 mmol, 17.8 eq.) was added and the resulting suspension was stirred and heated in an oil bath set at 130 °C. The progress of the reaction was monitored by HPLC. After 29 h the reaction mixture was cooled to room temperature, quenched with 3 N NaOH (3.9 ml_, 1 1 .75 mmol, 21 eq.) and diluted with toluene. Insoluble solids were filtered off and the layers were separated. The organic phase was washed with water and brine and then concentrated under vacuum. The residue was stirred in a mixture of heptanes and dichloromethane at room temperature and the resultant solids were collected by filtration and rinsed with heptane. The damp solid was dried under high vacuum to give 1 18 mg of the desired product as a pale solid.
1 H NMR {CDCI3}: 5(ppm) 10.75 (br s, 1 H, NH), 8.46 (d, J = 8.0 Hz, 1 H, ArH ), 8.36 (s, 1 H, ArH), 8.14 (d, J = 8.0 Hz, 1 H, ArH), 7.64 (br s, 1 H, NH), 7.45 - 7.49 (m, 2 H, 2X ArH), 7.13 (t, J = 8.0 Hz, 1 H, ArH), 6.72 (s, 1 H, ArH), 6.68 (d, J = 8.0 Hz, 1 H, ArH), 6.18 (br s, 1 H, NH), 3.88 (s, 3 H, OCH3), 3.02 (d, J = 4.0 Hz, 3 H, NCH3), 2.34 (s, 3 H, CH3).
19F NMR {CDC }: 5(ppm) 61 .4.
HPLC: 97.2% area, Rt = 7.34 min
GENERAL DEFINITIONS AND ABBREVIATIONS
Except where otherwise indicated, the following general conventions and definitions apply. Unless otherwise indicated herein, language and terms are to be given their broadest reasonable interpretation as understood by the skilled artisan. Any examples given are nonlimiting.
Any section headings or subheadings herein are for the reader's convenience and/or formal compliance and are non-limiting. Each variable definition above includes any subset thereof and the compounds of
Formula I include any combination of such variables or variable subsets.
The invention includes the compounds and salts thereof, and their physical forms, preparation of the compounds.
The compounds of the invention and term "compound" in the claims include any pharmaceutically acceptable salts or solvates, and any amorphous or crystal forms, or tautomers, whether or not specifically recited in context.
A recitation of a compound herein is open to and embraces any material or composition containing the recited compound (e.g., a composition containing a racemic mixture, tautomers, epimers, stereoisomers, impure mixtures, etc.). In that a salt, solvate, or hydrate, polymorph, or other complex of a compound includes the compound itself, a recitation of a compound embraces materials containing such forms. Isotopically labeled compounds are also encompassed except where specifically excluded. For example, hydrogen is not limited to hydrogen containing zero neutrons.
The term "substituted" and substitutions contained in formulas herein refer to the replacement of one or more hydrogen radicals in a given structure with a specified radical, or, if not specified, to the replacement with any chemically feasible radical. When more than one position in a given structure can be substituted with more than one substituent selected from specified groups, the substituents can be either the same or different at every position (independently selected) unless otherwise indicated. In some cases, two positions in a given structure can be substituted with one shared substituent. It is understood that chemically impossible or highly unstable configurations are not desired or intended, as the skilled artisan would appreciate.
In descriptions and claims where subject matter (e.g., substitution at a given molecular position) is recited as being selected from a group of possibilities, the recitation is specifically intended to include any subset of the recited group. In the case of multiple variable positions or substituents, any combination of group or variable subsets is also contemplated. Unless indicated otherwise, a substituent, diradical or other group referred to herein can be bonded through any suitable position to a referenced subject molecule. For example, the term "indolyl" includes 1 -indolyl, 2-indolyl, 3-indolyl, etc.
The convention for describing the carbon content of certain moieties is "(Ca-b)" or "Ca-
Cb" meaning that the moiety can contain any number of from "a" to "b" carbon atoms. C0alkyl means a single covalent chemical bond when it is a connecting moiety, and a hydrogen when it is a terminal moiety. Similarly, "x-y" can indicate a moiety containing from x to y atoms, e.g., 5. eheterocycloalkyl means a heterocycloalkyl having either five or six ring members. "Cx.y" may be used to define number of carbons in a group. For example, "Co-Valkyr means alkyl having 0-12 carbons, wherein C0alkyl means a single covalent chemical bond when a linking group and means hydrogen when a terminal group.
Unless otherwise indicated (such as by a connecting "-"), the connections of compound name moieties are at the rightmost recited moiety. That is, the substituent name starts with a terminal moiety, continues with any bridging moieties, and ends with the connecting moiety. For example, "heteroarylthioCi_4alkyl is a heteroaryl group connected through a thio sulfur to a Ci-4 alkyl, which alkyl connects to the chemical species bearing the substituent.
The term "aliphatic" means any hydrocarbon moiety, and can contain linear, branched, and cyclic parts, and can be saturated or unsaturated.
The term "alkyl" means any saturated hydrocarbon group that is straight-chain or branched. Examples of alkyl groups include methyl, ethyl, propyl, 2-propyl, n-butyl, iso-butyl, tert-butyl, pentyl, and the like.
The term "cyclic" means any ring system with or without heteroatoms (N, O, or S(O)0-2), and which can be saturated or unsaturated. Ring systems can be bridged and can include fused rings. The size of ring systems may be described using terminology such as "x.ycyclic," which means a cyclic ring system that can have from x to y ring atoms. For example, the term "g-iocarbocyclic" means a 5,6 or 6,6 fused bicyclic carbocyclic ring system which can be satd., unsatd. or aromatic. It also means a phenyl fused to one 5 or 6 membered satd. or unsatd. carbocyclic group. Nonlimiting examples of such groups include naphthyl, 1 ,2,3,4 tetrahydronaphthyl, indenyl, indanyl, and the like.
The term "halo" or "halogen" means fluoro, chloro, bromo, or iodo.
The term "leaving group"
The term "protecting group" means a suitable chemical group that can be attached to a functional group and removed at a later stage to reveal the intact functional group. Examples of suitable protecting groups for various functional groups are described in T.W. Greene and P.G.M. Wuts, Protective Groups in Organic Synthesis, 2d Ed., John Wiley and Sons (1991 and later editions); L. Fieser and M. Fieser, Fieser and Fieser's Reagents for Organic Synthesis, John Wiley and Sons (1994); and L. Paquette, ed. Encyclopedia of Reagents for Organic Synthesis, John Wiley and Sons (1995). The term "hydroxy protecting group", as used herein, unless otherwise indicated, includes Ac, CBZ, and various hydroxy protecting groups familiar to those skilled in the art including the groups referred to in Greene.

Claims

1 . A compound of Formula I, or a salt thereof:
Figure imgf000015_0001
wherein:
Ri is R4 or is selected from halogen, -OH, or -NR2R3;
or R1 is a leaving group selected from an optionally substituted arylsulfonate, alkylsulfonate, alkylsulfinate, or arylsulfinate;
R2 and R3 are independently H, optionally substituted Ci-i2aliphatic, or optionally substituted 4-iocyclic, except R2 and R3 are not both H;
or R2 and R3, together with the N to which they are attached, form an optionally substituted 4-iocyclic;
each R4 is 1 ,2,3-triazol-1 -yl or 1 ,2,4-triazol-1 -yl, either of which is optionally substituted; and
R5 is -CF3, -CN, halogen, or Ci_3aliphatic.
2. A compound of Claim 1 , or a salt thereof, having the Formula la:
wherein R1 is selected from
Figure imgf000015_0002
halogen, OH, , or -NR2R3; and
R2 and R3 are independently H, optionally substituted Ci-i2aliphatic, or optionally substituted _i0cyclic, except R2 and R3 are not both H; or R2 and R3, together with the N to which they are attached, form an optionally substituted .i0cyclic. he compound or salt of Claim 2, wherein R1 is selected from halogen, -OH, or
4. A process for regioselectively preparing a compound of Formula IV, comprising hydrol rmula III under basic conditions according to the scheme:
Figure imgf000016_0002
IV
III
wherein:
each R4 is 1 ,2,3-triazol-1 -yl or 1 ,2,4-triazol-1 -yl, either of which is optionally substituted; and R5 is -CF3, -CN, halogen, or Ci-3aliphatic.
5. The process of Claim 4, comprising hydrolyzing Compound 3 under basic conditions accordi
Figure imgf000016_0003
to obtain Compound 4.
6. The process of Claim 4 or 5, wherein the basic conditions are aqueous basic conditions.
7. The process of any one of Claims 4-6, wherein the basic conditions include at least one of pyridine, DIPEA, or lutidine.
8. The process of any one of Claims 4-6, wherein the basic conditions include pyridine.
9. The process of any one of Claims 4-7, wherein the hydrolysis is carried out at about 90-100 °C.
10. The process of any one of Claims 5-9, wherein Compound 4 is isolated by evaporating the reaction mixture, slurrying the crude product in an alcohol or alcohol containing mixture, and separating the liquid.
1 1 . The process of any one of Claims 5-10, wherein Compound 4 is obtained in a purity of about 98% or greater.
12. The process of any one of Claims 5-1 1 , wherein Compound 4 is obtained in an amount of about 1 kg or more from a single reaction mixture.
13. The process of any one of Claims 5-12, wherein Compound 4 is obtained from Compound 3 in a yield of about 70% or more.
14. A p cheme:
Figure imgf000017_0001
IV v
comprising chlorinating a compound according to Formula IV; wherein
R4 is 1 ,2,3-triazol-1 -yl or 1 ,2,4-triazol-1 -yl, either of which is optionally substituted; and R5 is -CF3, -CN, halogen, or Ci_3aliphatic.
15. The process of Claim 14, comprising chlorinating Compound 4 to obtain Compound 5 according
Figure imgf000017_0002
16. The process of Claim 15, comprising chlorinating with POCI3.
17. The process of any one of Claims 14-16, wherein the chlorination is carried out in the presence of catalytic phosphoric acid or DMF.
18. The process of any one of Claims 15-17, wherein Compound 5 is obtained from Compound 4 in a purity of about 98% or greater.
19. The process of any one of Claims 15-18, wherein Compound 5 is obtained in an amount of about 1 kg or more from a single reaction mixture.
20. The process of any one of Claims 15-19, wherein Compound 5 is obtained from Compound 4 in a yield of about 65% or more.
21. A process for preparing a compound of Claim 1 , wherein R1 is -NR2R3, comprising reacting Compo
Figure imgf000018_0001
to obtain a compound of the formula:
Figure imgf000018_0002
22. The process of Clai the compound of the formula:
Figure imgf000018_0003
with an amine having the formula compound of the formula
Figure imgf000018_0004
wherein R6 and R7 are independently H, optionally substituted Ci_i2aliphatic, or optionally substituted 4-i0cyclic, except R6 and R7 are not both H; or R6 and R7, together with the N to which they are attached, form an optionally substituted 4-i0cyclic.
23. A p
Figure imgf000019_0001
comprising reacting Compound 2 with 1 ,2,4-triazole in the presence of POCI3.
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