WO2003048330A2 - Hyaluronan synthases and methods of making and using same - Google Patents
Hyaluronan synthases and methods of making and using same Download PDFInfo
- Publication number
- WO2003048330A2 WO2003048330A2 PCT/US2002/038596 US0238596W WO03048330A2 WO 2003048330 A2 WO2003048330 A2 WO 2003048330A2 US 0238596 W US0238596 W US 0238596W WO 03048330 A2 WO03048330 A2 WO 03048330A2
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- hyaluronan synthase
- functionally active
- amino acid
- enzymatic activity
- sehas
- Prior art date
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
- C12N9/10—Transferases (2.)
- C12N9/1048—Glycosyltransferases (2.4)
- C12N9/1051—Hexosyltransferases (2.4.1)
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P19/00—Preparation of compounds containing saccharide radicals
- C12P19/26—Preparation of nitrogen-containing carbohydrates
Definitions
- the present invention relates to nucleic acid segments having coding regions encoding enzymatically active hyaluronate synthase (HAS), and to the use of these nucleic acid segments in the preparation of recombinant cells which produce hyaluronate synthase and its hyaluronic acid product.
- Hyaluronate is also known as hyaluronic acid or hyaluronan.
- the nucleic acid segments disclosed and claimed herein have at least one mutation as compared to the native nucleic acid segements such that the at least one mutation results in kinetic or enzymatic changes/modifications to the resulting enzyme.
- streptococcal infections is a major health and economic problem worldwide, particularly in developing countries.
- One reason for this is due to the ability of Streptococcal bacteria to grow undetected by the body's phagocytic cells, i.e., macrophages and polymorphonuclear cells (PMNs). These cells are responsible for recognizing and engulfing foreign microorganisms.
- phagocytic cells i.e., macrophages and polymorphonuclear cells (PMNs).
- PMNs polymorphonuclear cells
- HA hyaluronic acid
- the structure of HA is identical in both prokaryotes and eukaryotes.
- HA Since HA is generally nonimmunogenic, the encapsulated bacteria do not elicit an immune response and are therefore not targeted for destruction. Moreover, the capsule exerts an antiphagocytic effect on PMNs in vitro and prevents attachment of Streptococcus to macrophages. Precisely because of this, in Group A and Group C Streptococci, the HA capsules are major virulence factors in natural and experimental infections. Group A Streptococcus are responsible for numerous human diseases including pharyngitis, impetigo, deep tissue infections, rheumatic fever and a toxic shock-like syndrome. The Group C Streptococcus equisimilis is responsible for osteomyelitis, pharyngitis, brain abscesses, and pneumonia.
- HA is a high molecular weight linear polysaccharide of repeating disaccharide units consisting of N-acetylglucosamine (GlcNAc) and glucuronic acid (GlcUA).
- the number of repeating disaccharides in an HA molecule can exceed 30,000, a M r > 10 7 .
- HA is the only glycosaminogylcan synthesized by both mammalian and bacterial cells, particularly Groups A and C Streptococci and Type A Pasteurella multocida. These strains make HA which is secreted into the medium as well as HA capsules.
- HA is synthesized by mammalian and bacterial cells by the enzyme hyaluronate synthase which has been localized to the plasma membrane. It is believed that the synthesis of HA in these organisms is a multi-step process. Initiation involves binding of an initial precursor, UDP-GlcNAc or UDP-GlcUA. This is followed by elongation which involves alternate addition of the two sugars to the growing oligosaccharide chain. The growing polymer is extruded across the plasma membrane region of the cell and into the extracellular space. HA has been identified in virtually every tissue in vertebrates and has achieved widespread use in various clinical applications, most notably and appropriately as an intra-articular matrix supplement and in eye surgery.
- HA is primarily a passive structural component in the matrix of a few connective tissues and in the capsule of certain strains of bacteria to a recognition that this ubiquitous macromolecule is dynamically involved in many biological processes: from modulating cell migration and differentiation during embryogenesis to regulation of extracellular matrix organization and metabolism to important roles in the complex processes of metastasis, wound healing, and inflammation.
- HA is highly metabolically active and that cells focus much attention on the processes of its synthesis and catabolism.
- the half-life of HA in tissues ranges from 1 to 3 weeks in cartilage to ⁇ 1 day in epidermis.
- HA is also used in numerous technical applications (e.g., lubricating compounds), cosmetics and neutraceuticals.
- HAS HA synthase
- Markovitz et al. (1959) successfully characterized the HAS activity from Streptococcus pyogenes and discovered the enzymes's membrane localization and its requirements for sugar nucleotide precursors and Mg 2+ .
- Prehm (1983) found that elongating HA, made by B6 cells, was digested by hyaluronidase added to the medium and proposed that HAS resides at the plasma membrane.
- Philipson and Schwartz (1984) also showed that HAS activity cofractionated with plasma membrane markers in mouse oligodendroglioma cells.
- HAS assembles high M r HA that is simultaneously extruded through the membrane into the extracellular space (or to make the cell capsule in the case of bacteria) as glycosaminoglycan synthesis proceeds.
- This mode of biosynthesis is unique among macromolecules since nucleic acids, proteins, and lipids are synthesized in the nucleus, endoplasmic reticulum/Golgi, cytoplasm, or mitochondria.
- the extrusion of the growing chain into the extracellular space also allows for unconstrained polymer growth, thereby achieving the exceptionally large size of HA, whereas confinement of synthesis within a Golgi or post-Golgi compartment limits the overall amount or length of the polymers formed.
- High concentrations of HA within a confined lumen may also create a high viscosity environment that might be deleterious for other organelle functions.
- Several studies have attempted to solubilize, identify, and purify HAS from strains of Streptococci that make a capsular coat of HA as well as from eukaryotic cells. Although the streptococcal and murine oligodendroglioma enzymes were successfully detergent-solubilized and studied, efforts to purify an active HAS for further study or molecular cloning remained unsuccessful for decades.
- HasB is a UDP-glucose dehydrogenase, which is required to convert UDP-glucose to UDP-GlcUA, one of the substrates for HA synthesis.
- HasC is a UDP-glucose pyrophosphorylase, which is required to convert glucose 1-phosphate and UTP to UDP-glucose.
- the elusive HA synthase gene was finally cloned by a transposon mutagenesis approach, in which an acapsular mutant Group A strain was created containing a transposon interruption of the HA synthesis operon.
- Known sequences of the transposon allowed the region of the junction with streptococcal DNA to be identified and then cloned from wild-type cells.
- the encoded spHAS was 5-10% identical to a family of yeast chitin synthases and 30% identical to the Xenopus laevis protein DG42 whose function was unknown at the time (developmentally expressed during gastrulation), DeAngelis, et al. 1994.
- DeAngelis and Weigel (1994) expressed the active recombinant spHAS in Escherichia coli and showed that this single purified gene product synthesizes high M r HA when incubated in vitro with UDP-GlcUA and UDP-GlcNAc, thereby showing that both glycosyltransferase activities required for HA synthesis are catalyzed by the same protein, as first proposed in 1959.
- the seHAS protein has a high level of identity (approximately 70 percent) to the spHAS enzyme. This identity, however, is interesting because the seHAS gene does not cross- hybridize to the spHAS gene.
- mmHASl is 30% identical to spHAS and 55% identical to DG42.
- HAS1 cDNA isolated from a fetal brain library.
- the hsHASl cDNAs reported by the two groups, however, differ in length; they encode a 578 or a 543 amino acid protein, respectively. HAS activity has only been demonstrated for the longer form.
- Spicer et al. (1996) used a degenerate RT-PCR approach to clone a mouse embryo cDNA encoding a second distinct enzyme, which is designated mmHAS2.
- Transfection of mmHAS2 cDNA into COS cells directed de novo production of an HA cell coat detected by a particle exclusion assay, thereby providing strong evidence that the HAS2 protein can synthesize HA.
- RT-PCR showed that HAS2 mRNA was absent initially but expressed at high levels 3-4 h later suggesting that transcription of HAS2 regulates HA synthesis in this process.
- Both hsHAS2 are 552 amino acids in length and are 98% identical.
- mmHASl is 583 amino acids long and 95% identical to hsHASl, which is 578 amino acids long.
- Spicer et al. used a PCR approach to identify a third HAS gene in mammals.
- the mmHAS3 protein is 554 amino acids long and 71, 56, and 28% identical, respectively, to mmHASl, mmHAS2, DG42, and spHAS.
- Spicer et al. have also localized the three human and mouse genes to three different chromosomes (HAS1 to hsChr 19/mmChr 17; HAS2 to hsChr 8/mmChr 15; HAS3 to hsChr 16/mmChr 8).
- the central domain which comprises up to ⁇ 88% of the predicted intracellular HAS protein sequences, probably contains the catalytic regions of the enzyme.
- This predicted central domain is 264 amino acids long in spHAS (63% of the total protein) and 307-328 residues long in the eukaryotic HAS members (54-56% of the total protein).
- the exact number and orientation of membrane domains and the topological organization of extracellular and intracellular loops has been determined experimentally for spHAS and will be described in detail herein with respect to FIG. 14.
- spHAS is a HAS family member that has been purified and partially characterized. Initial studies using spHAS/alkaline phosphatase fusion proteins indicate that the N terminus, C terminus, and the large central domain of spHAS are, in fact, inside the cell. spHAS has 6 cysteines, whereas HAS1, HAS2, and HAS3 have 13, 14 and 14 Cys residues, respectively. Two of the 6 Cys residues in spHAS are conserved and identical in HAS1 and HAS2. Only one conserved Cys residue is found at the same position (Cys-225 in spHAS) in all the HAS family members.
- the possible presence of disulfide bonds or the identification of critical Cys residues needed for any of the multiple HAS functions noted below has not yet been elucidated for any members of the HAS family.
- the HAS enzyme family is highly unusual in the large number of functions required for the overall polymerization of HA.
- At least six discrete activities are present within the HAS enzyme: binding sites for each of the two different sugar nucleotide precursors (UDP-GlcNAc and UDP-GlcUA), two different glycosyltransferase activities, one or more binding sites that anchor the growing HA polymer to the enzyme (perhaps related to a B-X 7 -B motif), and a ratchet-like transfer mechanism that moves the growing polymer one or two sugars at a time. This later activity is likely coincident with the stepwise advance of the polymer through the membrane. All of these functions, and perhaps others as yet unknown, are present in a relatively small protein ranging in size from 417 (seHAS) to 588 (xlHAS) amino acids.
- nucleotide sequences of HAS genes as well as the amino acid sequences encoded therein from Streptococcus equisimilis (SEQ ID NOS: 1 and 2, respectively), Streptococcus pyogenes (SEQ ID NOS: 3 and 4, respectively), Streptococcus uberis (SEQ ID NOS: 5 and 6, respectively), Pasteurella multocida (SEQ ID NOS: 7 and 8, respectively), Xenopus laevis (SEQ ID NOS:9 and 10, respectively), Paramecium bursaria Chlorella virus (PBCV-1; SEQ ID NOS: ll and 12, respectively), and Sulfolobus solfataricus (SEQ ID NOS: 13 and 14, respectively).
- Streptococcus equisimilis SEQ ID NOS: 1 and 2, respectively
- Streptococcus pyogenes SEQ ID NOS: 3 and 4, respectively
- Streptococcus uberis SEQ ID NOS: 5 and 6,
- hyaluronan synthase in these systems and the purification and use of the hyaluronan synthase from these different systems indicates an ability to purify and isolate nucleic acid sequences encoding enzymatically active hyaluronan synthase in many different prokaryotic and viral sources, indeed, from microbial sources in general.
- Group C Streptococcus equisimilis strain D181 synthesizes and secretes hyaluronic acid (HA).
- Investigators have used this strain and Group A Streptococcus pyogenes strains, such as S43 and Alll, to study the biosynthesis of HA and to characterize the HA-synthesizing activity in terms of its divalent cation requirement, precursor (UDP-GlcNAc and UDP-GlcUA) utilization, and optimum pH.
- HA has been prepared commercially by isolation from either rooster combs or extracellular media from Streptococcal cultures.
- One method which has been developed for preparing HA is through the use of cultures of HA-producing Streptococcal bacteria.
- U.S. Patent No. 4,517,295 the contents of which are herein incorporated by reference in their entirety, describes such a procedure wherein HA-producing Streptococci are fermented under anaerobic conditions in a CO 2 -enriched growth medium. Under these conditions, HA is produced and can be extracted from the broth. It is generally felt that isolation of HA from rooster combs is laborious and difficult, since one starts with HA in a less pure state.
- HA produced is of higher molecular weight.
- preparation of HA by bacterial fermentation is easier, since the HA is of higher purity to start with.
- the molecular weight of HA produced in this way is smaller than that from rooster combs.
- HA prepared by Streptococcal fermentation oftentimes elicits immune responses as does HA obtained from rooster combs. Therefore, a technique that allows for the production of high molecular weight HA by bacterial fermentation would be a distinct improvement over existing procedures.
- high molecular weight HA has a wide variety of useful applications — ranging from cosmetics to eye surgery.
- HA Due to its potential for high viscosity and its high biocompatibility, HA finds particular application in eye surgery as a replacement for vitreous fluid. HA has also been used to treat racehorses for traumatic arthritis by intra-articular injections of HA, in shaving cream as a lubricant, and in a variety of cosmetic products due to its physiochemical properties of high viscosity and its ability to retain moisture for long periods of time.
- the U.S. Food and Drug Agency approved the use of high molecular weight HA in the treatment of severe arthritis through the injection of such high molecular weight HA directly into the affected joints. In general, the higher the molecular weight of HA that is employed the better.
- HA solution viscosity increases with the average molecular weight of the individual HA polymer molecules in the solution.
- very high molecular weight HA such as that ranging up to 10 7 , has been difficult to obtain by currently available isolation procedures.
- the recombinant methods of production disclosed herein allow for the production of HA having an average molecular mass of up to 10 7 and greater.
- streptococcal HA synthases are relatively small at ⁇ 49 kDa, they mediate at least six discrete functions: the ability to bind two different sugar nucleotide precursors, to catalyze two distinct glycosyltransferase reactions, to bind the HA acceptor polymer and to translocate the growing HA chain through the enzyme and the cell membrane.
- HASs All recombinant HASs, either from vertebrates or prokaryotes, have been shown to synthesize high molecular weight HA in vitro.
- the class I HAS proteins likely have essentially identical topological organizations in their N- terminal regions, which are highly homologous with spHAS, the only HAS whose membrane topology has been determined experimentally.
- Cys residues in spHAS there are six Cys residues in spHAS, four of which are conserved perfectly in seHAS and suHAS (FIG. 1); both of these latter enzymes have only four Cys residues (Kumari and Weigel, 1997; Ward et al., 2001). These four Cys residues in turn are generally conserved among the three vertebrate HAS isoenzymes (Weigel et al., 1997, and FIG. 1). However, to date the involvement of one or more of these conserved Cys residues in enzyme activity or disulfide bond formation has not been determined.
- the present invention addresses one or more shortcomings in the art. Using recombinant DNA technology, methods of producing enzymatically active HAS having at least one mutation therein (as compared to the native enzyme) is disclosed and claimed in conjunction with the preparation of recombinant cells which produce HAS and its hyaluronic acid product.
- the present invention involves the application of recombinant DNA technology to solving one or more problems in the art of hyaluronic acid (HA) preparation.
- HA hyaluronic acid
- HAS enzymatically active hyaluronate synthase
- the HAS genes disclosed herein were cloned from DNA of an appropriate microbial source and one or more mutations were engineered therein to provide HAS enzymes with novel or modified kinetic or enzymatic activities.
- hyaluronic acid synthase hyaluronate synthase
- hyaluronan synthase hyaluronan synthase
- HA synthase hyaluronic acid synthase
- hyaluronate synthase hyaluronan synthase
- HA synthase a glycosaminoglycan polysaccharide chain composed of alternating glucuronic acid and N-acetylglucosamine sugars, ⁇ 1,3 and ⁇ 1,4 linked.
- SeHAS describes the HAS enzyme derived from Streptococcus equisimilis, wherein expression of the gene encoding the seHAS enzyme correlates with virulence of Streptococcal Group A and Group C strains by providing a means of escaping phagocytosis and immune surveillance.
- modified amino acid residue as used herein will be understood to include mutated amino acid residues as well as other modifications to amino acid residues, including but not limited to post-translational modifications of the amino acid residue, such as phosphorylations, glycosylations, methylations, prenylations, and the like.
- the amino acid residue is modified by mutation, the mutation may arise by random mutagenesis or targeted or "site directed" mutagenic techniques.
- a specific amino acid residue of the hyaluronan synthase may be desired to target a specific property of enzyme is affected.
- the corresponding functionally active hyaluronan synthase is selected from the group consisting of spHAS, seHAS, suHAS, and pmHAS.
- the corresponding functionally active hyaluronan synthase may have an amino acid sequence essentially as set forth in at least one of SEQ ID NOs:2, 4, 6, 8, 10, 12 and 14.
- At least one of the modified target amino acid residues is a cysteine and thereafter is modified to an alanine or serine residue.
- the functionally active hyaluronan synthase having at least one modified target amino acid residue therein has an amino acid sequence comprising at least one SEQ ID Nos: 15-92.
- the present invention relates to a functionally active hyaluronan synthase having an altered enzymatic activity as compared to a corresponding functionally active native hyaluronan synthase.
- altered enzymatic activity as defined herein will be understood to refer to increased or decreased enzymatic activities, or activities that are enzymatically faster or slower than the native enzyme.
- altered enzymatic activity as used herein will also be understood to include enzymes that produce HA products having an altered size, that is, an HA polymer that has a an average molecular mass that is greater or less than the average molecular mass of an HA polymer produced by the native enzyme.
- the functionally active hyaluronan synthase having an altered enzymatic activity is selected from the group consisting of spHAS, seHAS, suHAS and pmHAS and has at least one modified target amino acid residue therein as compared to a corresponding functionally active native hyaluronan synthase.
- at least one of the modified target amino acid residues is a cysteine.
- the at least one modified target amino acid residue is modified to an alanine or a serine residue.
- the functionally active hyaluronan synthase having at least one modified target amino acid residue therein has an amino acid sequence essentially as set forth in at least one of SEQ ID NOs: 15- 92.
- the present invention relates to a host cell having a functionally active hyaluronan synthase having an altered enzymatic activity as compared to a corresponding functionally active native hyaluronan synthase incorporated therein such that the host cell is capable of producing hyaluronan.
- the functionally active hyaluronan synthase having an altered enzyme activity is selected from the group consisting of spHAS, seHAS, suHAS, and pmHAS.
- the functionally active hyaluronan synthase has at least one modified target amino acid therein as compared to a corresponding functionally active native hyaluronan synthase.
- the at least one modified target amino acid residue is a cysteine and thereafter is modified to an alanine or a serine residue.
- the functionally active hyaluronan synthase has an amino acid sequence essentially as set forth in at least one of SEQ ID NOs: 15-92.
- the present invention relates to a functionally active hyaluronan synthase having an amino acid sequence comprising SEQ ID NOs: 15-92. Also, the present invention relates to a functionally active hyaluronan synthase having an amino acid sequence as essentially set forth in SEQ ID NOs: 15-92.
- the present invention is directed to a method of providing a functionally active hyaluronan synthase having an altered enzymatic activity as compared to a corresponding functionally active native hyaluronan synthase.
- the method includes providing a hyaluronan synthase and modifying at least one target amino acid residue of the hyaluronan synthase to provide a functionally active hyaluronan synthase having an altered enzymatic activity.
- the hyaluronan synthase is selected from the group consisting of spHAS, seHAS, suHAS " , and pmHAS and the at least one modified target amino acid residue is a cysteine.
- the target amino acid residue may thereafter be modified to an alanine or serine residue or any other desired residue.
- the functionally active hyaluronan synthase having an altered enzymatic activity has an amino acid sequence essentially as set forth in at least one of SEQ ID NOs: 15-92.
- the present invention is related to a method for producing hyaluronic acid.
- the method includes providing a host cell having at least one expression construct comprising a hyaluronan synthase gene encoding a functionally active hyaluronan synthase incorporated therein such that the host cell is capable of producing hyaluronan, wherein the functionally active hyaluronan synthase has an altered enzymatic activity as compared to a corresponding functionally active native hyaluronan synthase.
- the host cell is then cultured under conditions appropriate for the production of hyaluronic acid.
- the method may further include separating the hyaluronic acid from the host cell.
- the altered enzymatic activity of the functionally active hyaluronan synthase may be an increased or decreased enzymatic activity, or the hyaluronan synthase may produce hyaluronic acid having an average molecular mass that is greater than or less than an average molecular mass of hyaluronic acid produced by a corresponding functionally active native hyaluronan synthase.
- the corresponding functionally active native hyaluronan synthase may have an amino acid sequence essentially as set forth in at least one of SEQ ID NOs:2, 4, 6, 8, 10, 12 and 14, while the functionally active hyaluronan synthase having an altered enzymatic activity may have an amino acid sequence essentially as set forth in at least one of SEQ ID NOs: 15-92.
- the functionally active hyaluronan synthase having an altered enzymatic activity may have at least one modified amino acid residue therein as compared to the corresponding functionally active native hyaluronan synthase, and the at least one modified amino acid residue may be a Cysteine that is modified to a Serine or Alanine.
- the expression construct may further include at least one gene encoding an enzyme for synthesis of a hyaluronic acid sugar precursor.
- the gene encoding an enzyme for synthesis of a hyaluronic acid sugar precursor may be present on a separate expression construct or may be chromosomally integrated.
- the enzyme for synthesis of a hyaluronic acid sugar precursor is selected from the group consisting of a pyrophosphorylase, a transferase, a mutase, a dehydrogenase, or an epimerase, capable of producing UDP-GlcNAc or UDP-GlcUA.
- At least one biosynthetic pathway gene of a hyaluronic acid sugar precursor or at least one gene encoding an enzyme for synthesis of a hyaluronic acid sugar precursor may be provided, either in the same or different expression construct or chomosomally integrated into the host cell.
- the hyaluronic sugar precursors may be expressed in the host cell by endogenous genes of the host cell.
- nutrients utilized for a hyaluronic acid sugar precursor biosynthetic pathway or nutrients supplying the hyaluronic acid sugar precursor biosynthetic pathway are fed or supplied to the host cell.
- FIG. 1 General conservation of four cysteines in seHAS within the Class I HAS protein family.
- the HAS protein sequences (and their accession numbers) shown are: Streptococcus equisimilis (seHAS, AAB87874, SEQ ID NO: 2); Streptococcus uberis (suHAS, CAB46918, SEQ ID NO: 6); Streptococcus pyogenes (spHAS, AAA17981, SEQ ID NO:4); chicken (ggHAS2, AF106940_1); mouse (mmHASl, BAA11654; mmHAS2, AAC53309; mmHAS3, AAC53128); human (hsHASl, NP_001514; hsHAS2, NP_005319; hsHAS3, AF232772_1); rabbit (ocHAS2, BAB63264; ocHAS2, BAB63264; ocHAS
- FIG. 2 Effect of NEM concentration and incubation time on the activity of seHAS and spHAS.
- Panel A E. coli membranes containing recombinant seHAS or spHAS were incubated at 4°C for 1 h with Phosphate Buffered Saline (PBS) alone (minus N-ethylmaleimide (NEM) control) or PBS containing different concentrations of NEM. The unreacted NEM was quenched by addition of dithioerythritol (DTE) to a final concentration of 1-6 mM and the samples were assayed for HAS activity as described hereinafter.
- PBS Phosphate Buffered Saline
- NEM N-ethylmaleimide
- DTE dithioerythritol
- Panel B The effect of incubation time on seHAS and spHAS activity was assessed by incubating the membranes with 5 mM NEM at 4°C for the indicated times. Aliquots were removed into assay buffer containing 5 mM DTE, and HAS activities were determined. HAS activity in control untreated membranes was stable for 1 h at 4°C. The inhibition of HAS activity is expressed as percent relative to the controls.
- FIG. 3 Effect of NEM or sodium arsenite treatment on the utilization of UDP-GlcUA and UDP-GlcNAc by wild-type seHAS.
- E. coli membranes containing seHAS protein were incubated at 4°C for 1 h in PBS containing 5 mM NEM or 10 mM Sodium Arsenite (SodArs), and the control membranes were incubated with PBS alone.
- Michaelis-Menten constants (K m ) were calculated from the activities of seHAS at varying concentrations of UDP-GlcUA or UDP- GlcNAc.
- FIG. 4 Relative enzyme activities of the Cys-to-Ala or Cys-to-Ser single Cys-mutants of seHAS.
- Membranes from E. coli (SURE) cells expressing either wild-type seHAS or the indicated single Cys-mutants of seHAS were assayed for HAS activity under linear conditions with respect to time and protein concentration, and the amount of HAS protein expressed in each membrane preparation was determined as described hereinafter.
- the normalized seHAS specific activities were calculated as nmol of UDP-GlcUA incorporated per pmol of HAS per hour.
- the specific activities of seHAS mutants are given as a percent relative to wild-type activity as 100%.
- FIG. 5 Relative enzyme activities of the Cys-to-Ala multiple Cys-mutants of seHAS. Membranes expressing wild-type seHAS, the indicated multiple Cys- mutants of seHAS or the seHAS Cys nu " were assayed and normalized as described in FIG. 4.
- FIG. 6 Substrates protect triple Cys-mutants of seHAS from inactivation by NEM.
- E. coli membranes containing the indicated triple Cys-mutant of seHAS were treated at 4°C for 10 min with no additions (control; 100% values) or with 5 mM NEM alone and in the presence of either UDP, UDP-GlcUA or UDP-GlcNAc. Unreacted Nem was then quenched and HAS activity was determined. Results are not shown for the mutant containing only Cys 367 , since NEM inactivation of this mutant is ⁇ 10% and all values were essentially identical.
- FIG. 7 Relative sizes of HA synthesized by wild-type seHAS and the Cys- mutants of seHAS.
- E. coli membranes containing wild-type or the 19 Cys- mutants of seHAS were incubated with UDP-[ 14 C]GlcUA and the other components described hereinafter for the assay of HAS activity.
- the 14 C-labeled HA products were then recovered and analyzed by agarose gel electrophoresis and autoradiography as described hereinafter.
- the molecular weight markers used were the indicated DNA fragments of defined length (kb). A 7 kb DNA fragment corresponds to an HA molecular weight of approximately 10 6 (32).
- SeHAS variants shown are as follows.
- Panel A Lane 1,C226A; Lane 2, C262A; Lane 3, C281A; Lane 4, C367A; Lane 5, wild-type; lane 6, C226S; Lane 7, C262S; Lane 8, C281S; Lane 9, C367S.
- Panel B Lane 1, C(226,262)A; Lane 2, C(226,281)A; Lane 3, C(226,367)A; Lane 4, C(262,281)A; Lane 5, C(262,367)A; Lane 6, C(281,367)A; Lane 7, wild-type; Lane8, ( ⁇ 3C)C 262 ; Lane 9, ( ⁇ 3C)C 281 ; Lane 10, ( ⁇ 3QC 367 ; Lane 11, seHAS cys nu "; Lane 12, ( ⁇ 3C)C 226 .
- FIG. 8 Reactivity of 14 C-NEM with the Cys-to-Ala double mutants of seHAS.
- E. co// ' membranes containing wild-type or double Cys-mutants of seHAS were incubated in two separate experiments (panels A and B) with 2.5 mM 14 C- NEM (8x l0 6 dpm) at 4°C for 10 min.
- the excess of 1 C-NEM was quenched by addition of 40 mM DTE and incubation for 5 min at 4°C.
- Trichloroacetic acid was added to a final concentration of 10%, and the samples were incubated at 4°C overnight.
- the membrane pellet was washed by centrifugation 3 times with 5% TCA, suspended in 20 ⁇ l of Laemmli sample buffer (33) and neutralized with sodium hydroxide. The samples were heated at 95°C for 3 minutes and subjected to SDS-PAGE. The gels were processed and analyzed as described hereinafter.
- FIG. 9 MALDI-TOF mass spectrographs of seHAS-His 6 derivatives covalently modified by a sulfhydryl reagent. Wild-type seHAS-His 6 (panel A) or seHAS-His 6 Cys mjl1 (panel B) were incubated with (the upper traces in each panel) or without (lower traces in each panel) biotin-PEO-maleimide, and the eluted proteins were then prepared for mass analysis as described hereinafter.
- the predicted m/z ratio for the (MH) + ion of unmodified seHAS Cys nu "-His 6 (with four Ala residues replacing the four Cys residues) is 48,473.1.
- FIG. 10 Kinetic analysis of UDP-GlcUA utilization by Cys-mutants of spHAS.
- Membranes prepared from cells expressing the indicated spHAS mutant were assayed as described hereinafter to assess the Michaelis-Menton constants for UDP-GlcUA: wildtype (D), C(124,366,402)A (T), C(124,261,280,366,402)A (A), and the Cys-null mutant (O).
- FIG. 11 Hill analysis of UDP-GlcNAc utilization by Cys-mutants of spHAS. Hill plots of data obtained from K m assays of wildtype and several mutant spHAS proteins, performed as in FIG. 10, demonstrate that the cooperative nature of UDP-GlcNAc utilization is not affected by alteration of Cys residues.
- the spHAS variants shown are : wildtype (D), C( 124,366,402)A (T), C(124,261,280,366,402)A (A), and the Cys-null mutant (O).
- FIG. 12 Inhibition of wildtype and Cys-mutants of spHAS by NEM.
- the activity of the indicated spHAS enzymes in membranes was assessed after pretreatment with (gray bars) or without (black bars) 20 mM NEM at room temperature for 90 min. Wildtype and many of the Cys-mutant variants of spHAS with multiple Cys residues mutated are still sensitive to NEM inhibition. The mutant containing only one Cys residue at Cys 225 and the Cys-null mutant were not sensitive to NEM inhibition.
- FIG. 13 MALDI-TOF mass spectrographs of spHAS-His 6 covalently modified by a sulfhydryl reagent. Wildtype spHAS-His 6 (panel A) or the Cys- null mutant of spHAS-His 6 (panel B) were bound to Ni +2 -NTA resin, washed and incubated for 2 h at 4 °C with (the upper traces in each panel) or without (lower traces in each panel) 10 mg/ml biotin-PEO-maleimide. The columns were washed and the proteins were then eluted and prepared for mass analysis as described hereinafter.
- centroid mass-to-charge ratios are indicated above the observed peaks and the predicted mass-to-charge ratios for covalent adducts containing 2, 3, 4, 5 or 6 biotin-PEO-maleimide groups per wildtype enzyme molecule are indicated in parentheses.
- the predicted m/z ratio for the (MH) + ion of unmodified spHAS Cys nu "-His 6 (with six Ala residues replacing the six Cys residues) is 48,484.4.
- FIG. 14 Alignment of seHAs, spHAS and suHAS sequences (FIG. 14A), and topological organization of spHAS and probably all Class I HASs (FIG. 14B).
- Membrane domains (MDs) are numbered 1-6 starting from the N-terminus.
- FIG. 15 Activity of seHAS mutants at K48 and E327.
- Panel A the sequence alignments show K48 of seHAS within MD2 (using the nomenclature in FIG. 14). Note that seHAS and spHAS contain 417 and 419 amino acids, respectively, and their numbering is not identical. The analogous position in spHAS is also Lys, and in the eukaryotic HASs this is a conserved polar residue: Gin, which could be involved in one or more H-bonds. MD4 contains an absolutely conserved Glu residue in the Class I HAS family, which is E327 in seHAS. Alteration of either K48 or E327 to the opposite charged residue caused substantial loss of HAS activity (FIG. 15B). Activity was normalized for HAS expression as described herein. HAS activity is substantially rescued in the "double-switch" mutant, in which K48E and E327K mutations have exchanged the two charged residues at their respective positions.
- FIG. 16 Size distributions of HA made by K48 and E327 mutants of seHAS are different from wild type. Data supporting FIG. 16 is described hereinafter in detail.
- FIG. 17 The HA size distribution made by mutants of seHAS can be altered.
- Membranes from wild-type seHAS (WT) and the seHAS(E327K/K48E) double-switch (DS) mutant were incubated with 1 mM UDP-GlcNAc and UDP- GlcUA for 1 h at 30°C as described by Tlapak-Simmons et al (1999). Reactions were terminated by chilling the samples on ice, centrifuging 20,000xg at 4°C for 20 min and adding EDTA to the supernatant to a final concentration of 40 mM. Prior to GPC-MALLS analysis, samples were heated at 100°C for 1 min.
- TSK-GEL G4000PW XL TSK-GEL G6000PW XL columns (7.8 x 30cm) from TOSO BIOSEP (Montgomeryville, PA).
- the chromatography buffer was 50 mM Na 2 HPO 4 , pH 7.0, 150 mM NaCl and the flow rate was 0.5 ml/min.
- MALLS is performed using a DAWN DSP Laser Photometer with an Optilab DSP refractometer (WYATT Technology, Santa Barbara, CA).
- nucleic acid segment and “DNA segment” are used interchangeably and refer to a DNA molecule which has been isolated free of total genomic DNA of a particular species. Therefore, a “purified” DNA or nucleic acid segment as used herein, refers to a DNA segment which contains a Hyaluronate Synthase (“HAS”) coding sequence yet is isolated away from, or purified free from, unrelated genomic DNA of the source cell. Included within the term “DNA segment” are DNA segments and smaller fragments of such segments and also recombinant vectors, including, for example, plasmids, cosmids, phage, viruses, and the like.
- HAS Hyaluronate Synthase
- a DNA segment comprising an isolated or purified HAS gene refers to a DNA segment including HAS coding sequences isolated substantially away from other naturally occurring genes or protein encoding sequences.
- the term "gene” is used for simplicity to refer to a functional protein, polypeptide or peptide encoding unit. As will be understood by those in the art, this functional term includes genomic sequences, cDNA sequences or combinations thereof. "Isolated substantially away from other coding sequences" means that the gene of interest, in this case HAS, forms the significant part of the coding region of the DNA segment, and that the DNA segment does not contain large portions of naturally-occurring coding DNA, such as large chromosomal fragments or other functional genes or DNA coding regions. Of course, this refers to the DNA segment as originally isolated, and does not exclude genes or coding regions later added to, or intentionally left in, the segment by the hand of man.
- a Class I or Class II HAS such as a Class I HAS from S. equisimilis or S. pyogenes, or a Class II HAS from P. multocida.
- Streptococcus is subdivided taxonomically into Lancefield Groups based on different cell wall carbohydrate antigens. There are 18 distinct groups, but the most common pathogens are A, B, C and D. Historically, the most common pathogens are also often given specific species names, but the unified Lancefield testing method is recognized as being a clear method of typing and thus a useful classification scheme.
- Streptococcus species that may be utilized as the source of the HAS gene include Group A Streptococcus, such as S. pyogenes and S. haemolyticus, and Group C Streptococcus, such as S. equi, S. equisimilis, S. zooepidemicus, S.
- eukaryotic enzymes may require significant post-translational modifications that can only be achieved in a eukaryotic host. This will tend to limit the applicability of any eukaryotic HA synthase gene that is obtained.
- those of ordinary skill in the art will likely realize additional advantages in terms of time and ease of genetic manipulation where a prokaryotic enzyme gene is sought to be employed.
- DNA sequences in accordance with the present invention will further include genetic control regions which allow the expression of the sequence in a selected recombinant host.
- control region employed will generally vary depending on the particular use (e.g., cloning host) envisioned.
- the invention concerns isolated DNA segments and recombinant vectors incorporating DNA sequences which encode a HAS gene, that includes within its amino acid sequence an amino acid sequence in accordance with at least one of SEQ ID NOs:2, 4, 6, 8, 10, 12 and 14-92.
- the invention concerns isolated DNA segments and recombinant vectors incorporating DNA sequences which encode a gene that includes within its amino acid sequence the amino acid sequence of a HAS gene or DNA, and in particular to a HAS gene or cDNA, corresponding to at least one of Streptococcus equisimilis HAS, Streptococcus pyogenes HAS, Streptococcus uberis HAS, Pasteurella multocida HAS, Xenopus laevis HAS, and Sulfolobus solfataricus HAS.
- DNA segment or vector encodes a full length HAS protein, or is intended for use in expressing the HAS protein
- preferred sequences are those which are essentially as set forth in at least one of SEQ ID NOs:2, 4, 6, 8, 10, 12 and 14-92.
- Nucleic acid segments having HA synthase activity may be isolated by the methods described herein.
- the term "a sequence essentially as set forth in SEQ ID NO:X” or "a sequence as set forth in SEQ ID NO:X” means that the sequence substantially corresponds to a portion of SEQ ID NO:X and has relatively few amino acids which are not identical to, or a biologically functional equivalent of, the amino acids of SEQ ID NO:X.
- biologically functional equivalent is well understood in the art and is further defined in detail herein, as a gene having a sequence essentially as set forth in SEQ ID NO:X or comprising SEQ ID NO:X, and that is associated with the ability of prokaryotes or eukaryotes to produce HA or a hyaluronic acid coat.
- the seHAS and spHAS coding sequences are approximately 70% identical and rich in the bases adenine (A) and thymine (T).
- Those of ordinary skill in the art would be surprised that the seHAS coding sequence does not hybridize with the spHAS gene and vice versa, despite their being 70% identical. This unexpected inability to cross-hybridize could be due to short interruptions of mismatched bases throughout the open reading frames.
- nucleic acid segment which encodes enzymatically active hyaluronate synthase.
- a nucleic acid segment encoding enzymatically active hyaluronate synthase may contain conserved or semi-conserved substitutions to the sequences set forth in SEQ ID NOs:2, 4, 6, 8, 10, 12 and 14-92, and yet still be within the scope of the invention.
- nucleic acid sequence may be highly identical and retain its enzymatic activity with regard to its unadulterated parent, and yet still fail to hybridize thereto.
- the invention discloses nucleic acid segments encoding enzymatically active hyaluronate synthases, such , as seHAS, spHAS, suHAS, xlHAS and pmHAS. Although seHAS and spHAS are 70% identical and both encode enzymatically active hyaluronate synthase, they do not cross hybridize. Thus, one of ordinary skill in the art would appreciate that substitutions can be made to the HAS nucleic acid segments listed in SEQ ID NOS: 1, 3, 5, 7, 9, 11 and 13 without deviating outside the scope and claims of the present invention. Standardized and accepted functionally equivalent amino acid substitutions are presented in Table I.
- Another preferred embodiment of the present invention is a purified nucleic acid segment that encodes a protein in accordance with SEQ ID NOs:2, 4, 6, 8, 10, 12 and 14-92 further defined as a recombinant vector.
- the term "recombinant vector” refers to a vector that has been modified to contain a nucleic acid segment that encodes an HAS protein, or fragment thereof.
- the recombinant vector may be further defined as an expression vector comprising a promoter operatively linked to said HAS encoding nucleic acid segment.
- a further preferred embodiment of the present invention is a host cell, made recombinant with a recombinant vector comprising an HAS gene.
- the preferred recombinant host cell may be a prokaryotic cell.
- the recombinant host cell is a eukaryotic cell.
- the term "engineered” or "recombinant” cell is intended to refer to a cell into which a recombinant gene, such as a gene encoding HAS, has been introduced. Therefore, engineered cells are distinguishable from naturally occurring cells which do not contain a recombinantly introduced gene. Engineered cells are thus cells having a gene or genes introduced through the hand of man. Recombinantly introduced genes will either be in the form of a cDNA gene, a copy of a genomic gene, or will include genes positioned adjacent to a promoter not naturally associated with the particular introduced gene.
- the recombinant host cell may further contain at least one gene encoding an enzyme for synthesis of a HA sugar precursor.
- the HA sugar precursor may be selected from a pyrophosphorylase, a transferase, a mutase, a dehydrogenase, or an epimerase, capable of producing UDP-GlcNAc or UDP- GlcUA, or combinations thereof.
- the recombinant host cell may further contain a biosynthetic pathway gene of a HA sugar precursor or an enzyme for synthesis of a HA sugar precursor. These one or more genes may be present on the same expression construct as the HAS gene or on separate expression construct. Optionally, these genes may be chromosomally integrated, as described in more detail hereinbelow.
- a host other than Streptococcus as may be used to produce recombinant HA synthase, it may be advantageous to employ a prokaryotic system such as E. coli, Bacillus strains, Lactococcus sp. , or even eukaryotic systems such as yeast or Chinese hamster ovary, African green monkey kidney cells, VERO cells, or the like.
- a prokaryotic system such as E. coli, Bacillus strains, Lactococcus sp.
- eukaryotic systems such as yeast or Chinese hamster ovary, African green monkey kidney cells, VERO cells, or the like.
- yeast or Chinese hamster ovary African green monkey kidney cells
- VERO cells African green monkey kidney cells
- the host cell may be a Bacillus cell, such as a Bacillus subtilis or Bacillus licheniformis cell, and the vector introduced therein contains a ⁇ ac/7/tys-compatible promoter to which the has gene is operably linked.
- Bacillus cell such as a Bacillus subtilis or Bacillus licheniformis cell
- the vector introduced therein contains a ⁇ ac/7/tys-compatible promoter to which the has gene is operably linked.
- the host cell is a Bacillus cell, such as Bacillus alkalophilus, Bacillus amyloliquefaciens, Bacillus brevis, Bacillus circulans, Bacillus clausii, Bacillus coagulans, Bacillus firmus, Bacillus lautus, Bacillus lentus, Bacillus licheniformis, Bacillus metaterium, Bacillus pumilus, Bacillus stearothermophilus, Bacillus subtilis and Bacillus thuringienisis.
- Bacillus cell such as Bacillus alkalophilus, Bacillus amyloliquefaciens, Bacillus brevis, Bacillus circulans, Bacillus clausii, Bacillus coagulans, Bacillus firmus, Bacillus lautus, Bacillus lentus, Bacillus licheniformis, Bacillus metaterium, Bacillus pumilus, Bacillus stearothermophilus, Bacillus subtilis and Bacillus
- the HA synthase-encoding DNA segments further include DNA sequences, known in the art functionally as origins of replication or "replicons", which allow replication of contiguous sequences by the particular host.
- origins of replication or "replicons” allow the preparation of extrachromosomally localized and replicating chimeric segments or plasmids, to which HA synthase DNA sequences are ligated.
- the employed origin is one capable of replication in bacterial hosts suitable for biotechnology applications.
- the isolation and use of other replication origins such as the SV40, polyoma or bovine papilloma virus origins, which may be employed for cloning or expression in a number of higher organisms, are well known to those of ordinary skill in the art.
- the invention may thus be defined in terms of a recombinant transformation vector which includes the HA synthase coding gene sequence together with an appropriate replication origin and under the control of selected control regions.
- HAS gene or cDNA may be obtained which contain full complements of genes or cDNAs from a number of sources, including other strains of Streptococcus, or from eukaryotic sources, such as cDNA libraries.
- Virtually any molecular cloning approach may be employed for the generation of DNA fragments in accordance with the present invention.
- the only limitation generally on the particular method employed for DNA isolation is that the isolated nucleic acids should encode a biologically functional equivalent HA synthase.
- any cloning vector can be employed to realize advantages in accordance with the invention.
- Typical useful vectors include plasmids and phages for use in prokaryotic organisms and even viral vectors for use in eukaryotic organisms. Examples include pKK223-3, pSA3, recombinant lambda, SV40, polyoma, adenovirus, bovine papilloma virus and retroviruses.
- pKK223-3 pSA3
- recombinant lambda SV40
- polyoma polyoma
- adenovirus bovine papilloma virus
- retroviruses retroviruses
- Vectors such as these allow one to perform clonal colony selection in an easily manipulated host such as E. coli, followed by subsequent transfer back into a food grade Lactococcus or Bacillus strain for production of HA.
- These are benign and well studied organisms used in the production of certain foods and biotechnology products. These are advantageous in that one can augment the Lactococcus or Bacillus strain's ability to synthesize HA through gene dosaging (i.e., providing extra copies of the HA synthase gene by amplification) and/or inclusion of additional genes to increase the availability of HA precursors.
- HA synthase gene copy number The inherent ability of a bacterium to synthesize HA can also be augmented through the formation of extra copies, or amplification, of the plasmid that carries the HA synthase gene. This amplification can account for up to a 10-fold increase in plasmid copy number and therefore the HA synthase gene copy number.
- Another procedure that would further augment HA synthase gene copy number is the insertion of multiple copies of the gene into the plasmid.
- Another technique would include integrating the HAS gene and/or the sugar precursor gene(s) into chromosomal DNA. This extra amplification would be especially feasible, since the bacterial HA synthase gene size is small.
- the chromosomal DNA-ligated vector is employed to transfect the host that is selected for clonal screening purposes such as E. coli, through the use of a vector that is capable of expressing the inserted DNA in the chosen host.
- the HA synthase gene is introduced into the host cell chromosome via homologous or heterologous recombination.
- the has gene may be more stable in this configuration, especially without drug selection.
- Various vectors may be employed to introduce the has gene into Bacillus, such as pTLH or pKSV7, or into yeast, such as YIp211, or into animal cells, such as pcDNA/FRT.
- the DNA is first introduced into the host cell by transformation, transduction or electroporation.
- the DNA segment with the has gene is then stably integrated into the host chromosome.
- the spHAS gene was used to repair a mutant Streptococcus chromosome by transduction and integration; this operation resulted in HA production (DeAngelis et al, 1993a).
- a eukaryotic source such as dermal or synovial fibroblasts or rooster comb cells
- an enzyme with reverse transcriptase activity and ligation with the selected vector.
- a preferred technique involves reverse transcription.
- a cDNA library is prepared in the selected host by accepted techniques, such as by ligation into the appropriate vector and amplification in the appropriate host.
- phage expression vectors such as ⁇ gtll, ⁇ gtl2, ⁇ Gemll, and/or ⁇ ZAP for the cloning and expression screening of cDNA clones.
- the invention concerns isolated DNA segments and recombinant vectors that include within their sequence a nucleic acid sequence essentially as set forth at least one of in SEQ ID NOS: 1, 3, 5, 7, 9, 11, 13 or a variant thereof wherein the variant encodes an amino acid sequence essentially as set forth in at least one of SEQ ID NOs: 15-92.
- the term "essentially as set forth in SEQ ID NO:X” or “as set forth in SEQ ID NO:X”, for example, is used in the same sense as described hereinabove and means that the nucleic acid sequence substantially corresponds to a portion of SEQ ID NO:X, and has relatively few codons which are not identical, or functionally equivalent, to the codons of SEQ ID NO:X.
- amino acid and nucleic acid sequences may include additional residues, such as additional N- or C-terminal amino acids or additional 5' or 3' nucleic acid sequences, and yet still be essentially as set forth in one of the sequences disclosed herein, so long as the sequence meets the criteria set forth above, including the maintenance of biological protein activity where protein expression and enzyme activity are concerned.
- the addition of terminal sequences particularly applies to nucleic acid sequences which may, for example, include various non-coding sequences flanking either of the 5' or 3' portions of the coding region or may include various internal sequences, which are known to occur within genes.
- amino acid sequence of the has gene product in eukaryotes appears to be 40% larger than that found in prokaryotes, yet the prokaryotic and eukaryotic HASs display essentially identical enzymologic abilities to synthesize HA.
- Sequences which are essentially the same as those set forth in SEQ ID NOS: l, 3, 5, 7, 9, 11, 13 or a variant thereof wherein the variant encodes an amino acid sequence essentially as set forth in at least one of SEQ ID NOs: 15-92 may also be functionally defined as sequences which are capable of hybridizing to a nucleic acid segment containing the complement of SEQ ID NOs: l, 3, 5, 7, 9, 11, 13 or a variant thereof wherein the variant encodes an amino acid sequence essentially as set forth in at least one of SEQ ID NOs: 15-92 under "standard stringent hybridization conditions," “moderately stringent hybridization conditions,” “less stringent hybridization conditions,” or “low stringency hybridization conditions.” Suitable "standard” or “less stringent” hybridization
- standard stringent hybridization conditions “moderately stringent conditions,” and “less stringent hybridization conditions” or “low stringency hybridization conditions” are used herein, describe those conditions under which substantially complementary nucleic acid segments will form standard Watson-Crick base-pairing and thus “hybridize” to one another.
- a number of factors are known that determine the specificity of binding or hybridization, such as pH; temperature; salt concentration; the presence of agents, such as formamide and dimethyl sulfoxide; the length of the segments that are hybridizing; and the like.
- There are various protocols for standard hybridization experiments Depending on the relative similarity of the target DNA and the probe or query DNA, then the hybridization is performed under stringent, moderate, or under low or less stringent conditions.
- the hybridizing portion of the hybridizing nucleic acids is typically at least about 14 nucleotides in length, and preferably between about 14 and about 100 nucleotides in length.
- the hybridizing portion of the hybridizing nucleic acid is at least about 60%, e.g., at least about 80% or at least about 90%, identical to a portion or all of a nucleic acid sequence encoding a HAS or its complement, such as SEQ ID NO: 2 or 4 or the complement thereof.
- Hybridization of the oligonucleotide probe to a nucleic acid sample typically is performed under standard or stringent hybridization conditions.
- T m Nucleic acid duplex or hybrid stability is expressed as the melting temperature or T m , which is the temperature at which a probe nucleic acid sequence dissociates from a target DNA. This melting temperature is used to define the required stringency conditions. If sequences are to be identified that are related and substantially identical to the probe, rather than identical, then it is useful to first establish the lowest temperature at which only homologous hybridization occurs with a particular concentration of salt (e.g., SSC, SSPE, or HPB). Then, assuming that 1% mismatching results in a 1°C decrease in the T m , the temperature of the
- the change in T m can be
- stringent hybridization conditions include hybridizing at about 68°C in 5x
- stringent conditions include hybridizing as described above in 5xSSC ⁇ 5xDenhardt's solution 1% SDS washing in 3x SSC at 42°C.
- the present invention also encompasses DNA segments which are complementary, or essentially complementary, to the sequence set forth in SEQ ID NOs: l, 3, 5, 7, 9, 11, 13 or a variant thereof wherein the variant encodes an amino acid sequence essentially as set forth in at least one of SEQ ID NOs: 15-92.
- Nucleic acid sequences which are "complementary" are those which are capable of base-pairing according to the standard Watson-Crick complementarity rules.
- complementary sequences means nucleic acid sequences which are substantially complementary, as may be assessed by the same nucleotide comparison set forth above, or as defined as being capable of hybridizing to the nucleic acid segment of SEQ ID NOS: l, 3, 5, 7, 9, 11, 13 or a variant thereof wherein the variant encodes an amino acid sequence essentially as set forth in at least one of SEQ ID NOs: 15-92.
- nucleic acid segments of the present invention may be combined with other DNA sequences, such as promoters, polyadenylation signals, additional restriction enzyme sites, multiple cloning sites, epitope tags, poly histidine regions, other coding segments, and the like, such that their overall length may vary considerably. It is therefore contemplated that a nucleic acid fragment of almost any length may be employed, with the total length preferably being limited by the ease of preparation and use in the intended recombinant DNA protocol.
- this invention is not limited to the particular nucleic acid and amino acid sequences of SEQ ID NOs: l, 3, 5, 7, 9, 11 or 13 (or a variant thereof wherein the variant encodes an amino acid sequence essentially as set forth in at least one of SEQ ID NOs: 15-92) and SEQ ID NOS: 15-92, respectively.
- Recombinant vectors and isolated DNA segments may therefore variously include the HAS coding regions themselves, coding regions bearing selected alterations or modifications in the basic coding region, or they may encode larger polypeptides which nevertheless include HAS-coding regions or may encode biologically functional equivalent proteins or peptides which have variant amino acids sequences.
- Sulf hy dry I reagents inhibit the activity of seHAS and spHAS.
- SeHAS is the smallest HAS protein (417 amino acids) and contains four Cys residues.
- the four cysteines of seHAS are completely conserved among the three prokaryotic HASs (excluding pmHAS) and are conserved positionally among all the vertebrate HASs (FIG. 1).
- the activities of seHAS and spHAS were assayed in the presence of different sulfhydryl reagents (Table II). Almost identical sensitivities were observed for the two enzymes.
- E. coli membranes expressing the recombinant seHAS-H 6 or spHAS-H 6 proteins were incubated at 4°C for 1 h with PBS containing either 5 mM NEM, 5 mM IAA, 0.5 mM 5,5'-dithiobis-(2-nitrobenzoic acid), 0.05 mM methylmethanethiosulfonate, 10 mM sodium arsenite or no addition (control, which was set as 100%).
- the remaining seHAS activity was then determined in quadruplicate and expressed as % relative to the control. The mean values and standard deviations are shown.
- E. coli membranes containing seHAS protein were incubated at 4°C for 1 h with PBS alone (control) or PBS containing 5 mM NEM or 10 mM sodium arsenite.
- the activity of seHAS was determined in triplicate with varying concentrations of UDP-GlcUA or UDP-GlcNAc as described in Materials and Methods, and the Michaelis-Menten Constants (K m and V max ) ⁇ standard errors were calculated.
- the K m values for UDP-GlcUA of the C226A and C262A mutants were higher when compared to the corresponding values for the C226S and C262S variants.
- the K m values for UDP-GlcNAc were not quite as clear-cut.
- GlcNAc value for the C226S mutant was higher than that of the C226A mutant, whereas the C262A and C281A mutant proteins both had higher K UDP .
- Cys-to-Ala double mutants C226,262A; C226,281A; C226,367A; C262,281A; C262,367A; C281,367A
- the triple Cys-mutants are designated by a convention that indicates which of the four Cys residues remains unaltered.
- the triple mutant containing C(226,281,367)A changes is seHAS( ⁇ 3C)C 262 , which has only one Cys at position 262 as in the wild-type protein.
- the HA synthase activities of these multiple-Cys seHAS mutants were then determined under saturating conditions for each substrate and normalized to the amount of seHAS protein present in the isolated membranes (FIG. 5).
- the least active double mutant was C(226,262)A, which had only 2-3% of the specific activity of the wild-type enzyme. All three double mutants, in which Cys 226 was changed to Ala, had lower activity compared to the other three double mutants.
- Two of the triple mutants, seHAS( ⁇ 3C)C 226 and seHAS( ⁇ 3C)C 262 were significantly more active ( ⁇ 3-30 fold) than the other two triple mutants seHAS( ⁇ 3C)C 281 and seHAS( ⁇ 3C)C 367 .
- the Cys-null seHAS mutant was more active than the two least active triple Cys-mutants and two of the six double Cys-mutants (FIG. 5).
- the decreased activities of the single and multiple Cys-mutants are consistent with the inhibition of seHAS or spHAS by sulfhydryl reagents described above.
- Based on the lower specific activities of most of these Cys-mutants it was concluded that no particular cysteine residue in seHAS is required for a critical step during HA synthesis. Nonetheless, these data also support the conclusion that Cys 226 and Cys 262 may play a role, or at least influence, one or more of the six sub-activities required for the overall activity of HAS. At least the alteration or modification of these latter two residues hinders the enzyme and results in apparently lower V max values.
- the C226A, C(226,367)A, seHAS( ⁇ 3C)C 367 and Cys-null mutants had activities between 17-30% of wild- type.
- the remaining eight seHAS Cys-mutants retained 40% or more of the activity of wild-type seHAS.
- the only mutant (Table IV) that had a higher activity than wild-type was seHAS(C367A).
- Cysteine residues are not essential for HAS activity but are in or near substrate binding sites.
- the C281A and C367S single mutants and the C(262,281)A and C(281,367)A double mutants made smaller products.
- Three of the four triple mutants (all except seHAS( ⁇ 3C)C 281 ) and the Cys-null mutant made smaller HA products (FIG. 6B).
- the smallest relative HA size distribution was made by the triple mutant seHAS( ⁇ 3C)C 226 .
- the HA size distributions of the seHAS mutants C(226)S, C(226,262)A and ( ⁇ 3C)C 281 were similar to that of the wild-type enzyme, even though these mutants had the lowest activity (1.4 -8 % of wild- type), and therefore the lowest HA elongation rates.
- the purified enzyme was treated with biotin-PEO-maleimide, and the modified protein products were then analyzed by MALDI-TOF mass spectrometry (FIG. 9). For each biotin-PEO-maleimidyl group added, the mass of the seHAS derivative increased 525.6 Da.
- the treated wild-type seHAS contained a distribution of derivatized products with increased masses equal to the addition of one-to-four biotin-PEO-maleimide groups per seHAS (FIG. 9A). Most of the proteins were modified by the addition of 3 or 4 groups, demonstrating that the enzyme has no disulfide bonds.
- the observed mass values for the three largest adducts differed from the predicted values by ⁇ 0.005%.
- the degree of modification was only slightly higher when the wild-type seHAS was treated with biotin-PEO-maleimide in the presence of 6 M guanidinium hydrochloride (not shown). This latter result indicates that none of the four Cys residues is substantially buried in the native enzyme; they are all accessible to react with the relatively large modifying reagent.
- the seHAS Cys nul1 protein was also treated with biotin-PEO-maleimide, as a control, to verify that no derivitized enzyme products could be formed in the absence of Cys groups (FIG. 9B).
- spHAS(C225A) appeared to be nearly inactive, and spHAS(C261A) and spHAS(C280A) had less than half the activity of wildtype.
- these initial impressions were incorrect due to significant variations in the expression of spHAS protein among the various mutants.
- the spHAS(C261,280A) and Cys-null mutant had 50-75% of the wildtype activity.
- spHAS(C124,366,402A) and spHAS(C366A) had an increased activity that was ⁇ 150% of wildtype.
- the other single mutants, as well as spHAS(C124,402A), and spHAS(C124,261,280,366,402A) demonstrated less than a 25% variation from the wildtype V max .
- Membranes prepared from E. coli SURE cells expressing the indicated spHAS variants were fractionated by SDS-PAGE and the proteins were transferred to nitrocellulose. SpHAS protein levels were quantitated as described in Methods and the values were normalized to that of the wildtype. Student t-tests were performed to assess the significance of differences compared to the expression of the wildtype enzyme.
- the V max values are in ⁇ mol of both substrates incorporated per hour per pmol spHAS.
- Cys residues may not be required for the enzymatic activity of the HAS proteins, they could still be important in the structural integrity and long-term stability of the enzyme as indicated by the reduced expression of the spHAS(C225S) mutant and the increased expression of the spHAS(C124S) and spHAS(C261A) mutants (Table VII). Cys residues may also be important for maintaining the proper enzyme conformation to allow extrusion of the growing HA chain through the membrane.
- the primary manner in which Cys residues play structural roles in proteins is by forming either inter- or intra-molecular disulfide bonds.
- treated wildtype spHAS samples revealed a distribution of derivatized products with increased masses equal to the addition of from one- to-six biotin-PEO-maleimide groups per spHAS, with the majority of the protein being modified by the addition of 5 or 6 groups (FIG. 13A).
- samples of spHAS Cys"nu " were treated with biotin-PEO-maleimide in the same way to verify that no derivitized enzyme products would be formed in the absence of Cys groups. The result (FIG.
- HA produced by mutants of spHAS and seHAS in one hour at saturating substrate concentration were run on 1% agarose gels. Reactions were radiolabeled by including UDP- f 14 C]GlcUA in the reaction mix and HA product distribution was assessed with a Molecular Dynamics Phosphoimager. Size was estimated relative to High Molecular Weight and Kb DNA ladder standards. Distribution of product is reported as the percentage of total counts (IDV) between various size ranges. The prevalent HA size produced (“Peak Size”) is reported as the approximate MW in MDa at which the greatest IDV intensity was located. MW ranges are shown as MDa and kbp of DNA in parentheses. C226A, C262A, C281A, and C367A are mutants of seHAS.
- HASs polymerize long HA chains.
- HA chains must be free to move through the enzyme at rapid rates as they are elongated.
- HA-binding ability of HAS would not be a "high affinity” interaction, since a low off-rate would hinder chain movement (i.e., translocation though the membrane).
- HA-binding "affinity" cannot be very low because some chains are held for > 10,000 cycles of HA disaccharide assembly and translocation before large HA chains ( ⁇ 4X10 6 ) are released.
- FIG. 14A illustrates 5 motifs that are putative HA-binding motifs of the type B-X 7 -B, where B is a basic amino acid (i.e. Arg or Lys) and X is any amino acid, as described by Yang et al., 1994.
- HAS utilizes two types of HA-binding regions; one type that holds and orients the donor HA-UDP chain for assembly of the next disaccharide unit and one type that holds the growing HA chain when it is released from the former site(s) and is translocated through the membrane.
- motifs #2-5 are absolutely conserved in the strepHASs and are generally conserved at these positions in the Class I HAS family (i.e., conserved within the same general region of the primary sequence).
- motif #1 in suHAS contains Gin, rather than Arg/Lys (which could still H-bond with HA), it is still a good candidate motif, because partial or "weaker" HA-binding motifs must be considered for the reasons noted above.
- An overlapping motif at position #1 is highly conserved in the Class I family.
- the topological organization of spHAS and probably all Class I HASs is shown in FIG. 14B.
- the experimentally determined topology of spHAS is similar to that initially predicted except for two membrane domains (MD3 and MD6) that are not transmembrane domains (TMDs).
- the N- and the C-termini and the large central domain are intracellular.
- the first two TMDs are ⁇ -sheets (not ⁇ -helices) and create a small extracellular loop that is inaccessible to proteases.
- MD3 within the large internal central domain is associated with, but does not traverse, the membrane.
- MD6 which has amphipathic helices, is within the C-terminal 50 amino acids of spHAS and does not cross the membrane. Numerous Mds may be required for HAS to create a pore-like structure through which a growing HA chain can be extruded to the exterior. Based on their similarities, all Class I HASs should have similar topological organizations of their spHAS-related domains.
- Light scattering is routinely used to obtain important information that complements the kinetic characterization of HAS variants.
- a current study uses E. coli membranes containing a HAS variant, to examine the HA size produced by all the Cys-mutants of seHAS and spHAS. Analysis of HA size is not as straightforward as one might expect, since it has been discovered that HA size distributions made by HAS can change slightly with time and are surprisingly sensitive to HAS concentration - even under conditions of high concentrations and kinetic linearity with time and protein.
- Kinetic analyses assess the overall rates of sugar incorporation into HA regardless of size, and do not reflect changes in the size of the HA products being made. We are only aware of this because GPC-MALLS analysis is so sensitive.
- the time-dependent changes in HA size distribution are not surprising when one considers that the HAS molecules present in a sample may need to go through several rounds of chain synthesis before a steady-state size distribution is reached. Additionally, based on the changing ratio of substrates: HAS, very large chains are made at early times when this ratio is the highest and smaller chains are made latter as this ratio falls.
- the standard conditions utilized in the method of the present invention for comparing HA size differences by MALLS is that ⁇ 5% of the substrates should be consumed, synthesis must be linear for > 2 h and the HA size distribution observed should not change significantly over a several-fold range of increasing protein concentration.
- the seHAS(E327K) mutant has only ⁇ 0.2% of wild-type activity.
- creating a "double-switch mutant" seHAS(K48E/E327K) in which the charged residues were switched, restored a significant level of HAS activity ( ⁇ 8% of wilt-type).
- Lys48 and Glu327 interact with each other and that MD2 and MD4 are close enough for these residues to form an ion-pair or H-bonds.
- the interaction of K48 and E327 appears to be very important, perhaps critical, for enzyme activity. Further supporting this conclusion is the very interesting result that the size distribution of HA produced by the double-switch mutant is shifted dramatically to smaller size (Fig 15 and 16). Based on GPC-MALLS analysis the weight average mass (Mw) for the mutant is 0.26 million compared to 2.8 million for wild-type seHAS.
- the HAS enzymes are unique in that they polymerize two sugars, GlcUA and GlcNAc, in an alternate fashion and simultaneously extrude the growing HA chain through the plasma membrane.
- the streptococcal HASs are the smallest members of the Class I HAS family, and perform all the functions required for HA synthesis and secretion from cells. Unlike the eukaryotic HAS enzymes, with which they share substantial homology and probably an identical topological organization in their common regions, the streptococcal enzymes have been easier to study because they can be readily overexpressed, purified and characterized. To date, only one eukaryotic enzyme, mouse HASl, has been overexpressed, purified and characterized kinetically.
- Cys residues in seHAS and spHAS were initially focused on for three reasons.
- p-chloro-mercurobenzoate had been reported to inhibit HA biosynthesis by the Group A spHAS in a cell-free system (Sugahara et al., 1979). Although no further studies on the role of sulfhydryls in HAS function had appeared since that report, it was important to investigate the possibility that Cys residues may be required for HAS activity.
- All HAS enzymes make a broad size range of HA, rather than a discrete size. This heterogeneity of product size may be important biologically for particular functions of the three vertebrate HAS enzymes.
- the HA size distribution made varies among the streptococcal HASs and also among the three mammalian HAS isoforms. These enzymatic differences in the size distribution of HA products, which have only been observed in vitro (e.g. in isolated cells or membrane preparations), could have very significant biological consequences if they also occur in vivo in various eukaryote cells and tissues.
- HA is not simply a structural component of the extracellular matrices of most vertebrate tissues, but also a cell signaling molecule capable of modifying important aspects of cell behavior, including migration and adhesion.
- the most interesting and surprising aspect of this new paradigm regarding the biological functions of HA is that many cells respond only if the HA is a specific size. In particular, small oligosaccharides of HA have very different biological activities than large, native-size HA.
- Cys-mutants may actually synthesize substantially larger HA than wild-type but the migration differences compared to wild-type are very small.
- MALLS gel permeation chromatography coupled to dynamic light scattering
- FIG. 17 The present invention demonstrates a role of Cys residues in controlling HA chain length.
- the single seHAS Cys-mutant C281A makes much smaller HA
- the seHAS C281S mutant makes HA products very similar in size, compared to wild-type seHAS.
- the spHAS Cys mutant C280A also makes much smaller HA, as seen in co-pending U.S. Serial No. 10/011,771, the contents of which have been previously incorporated herein by reference in their entirety.
- the triple Cys-mutant seHAS( ⁇ 3C)C 281 also had very low activity, similar to the double Cys-mutant seHAS(C226,262A), and also synthesized normal size HA. These results indicate that alteration of Cys 367 does not cause decrease in HAS activity and is consistent with the single Cys-mutant results in Table VIII. In fact, the seHAS C367A and spHAS C366A mutants both exhibited increases in activity over the corresponding wild-type enzymes.
- seHAS(C226,262A) was substantially relieved by the introduction of a C281A change to create the triple Cys-mutant seHAS( ⁇ 3C)C 367 .
- a structural or functional constraint, perhaps related to HA chain length, brought about by mutating Cys 226 and Cys 262 to Ala is substantially relieved by simultaneously mutating Cys 281 .
- the triple mutant seHAS( ⁇ 3C)C 367 and the Cys-null mutant had similar activities and HA product sizes, suggesting a similar degree of compensation for the otherwise deleterious Cys 226 /Cys 262 double mutation.
- the Cys-null mutant of seHAS retained approximately 20% of wild-type activity.
- Cys 226 and Cys 262 play an important role in the overall activity and kinetic characteristics of seHAS, but Cys 281 may play a role in regulating HA size.
- Cys 226 , Cys 262 , and Cys 281 are present in the central domain region of seHAS (FIG. 1), which is the region that contains ⁇ -glycosyltransferase family motifs.
- the topological model predicts that Cys 367 is very close to transmembrane domain 4 and is probably not near the glycosyltransferase motifs.
- HA translocation Another important consideration in evaluating the importance of Cys residues in spHAS, and the other Class I HAS family members in general, may be their involvement in HA translocation.
- the synthesis and extracellular accumulation by some bacteria of polysaccharides, such as polysialic acid often requires multiple factors and proteins encoded by very complex multi-gene operons (Moxon and Kroll, 1990; Bliss and Silver, 1996).
- HA products are very similar for enzyme in isolated membranes or after solubilization with dodecylmaltoside and affinity purification (data not shown). Therefore, the presence of a natural intact phospholipid bilayer and membrane does not affect the ability of the HAS enzymes to synthesize HA.
- a suitable assay to evaluate the ability of the wildtype or Cys-mutant enzymes to translocate HA is not available.
- Vectors, Primers, and Reagents pEx-1 was purchased from Promega as part of the Altered Sites Mutagenesis kit.
- the expression vector pKK223 was from Pharmacis Biotech Inc.
- E. coli SURE cells were from Stratagene.
- Successful mutagenesis was achieved with the QUICK CHANGETM Mutagenesis kit from Stratagene.
- Primers were synthesized by The Great American Gene Company (Ransom Hill Bioscience, Inc., CA), NBI, or Midland Certified Reagent Company. All of the mutagenic oligonucleotides were synthesized by Genosys Biotechnologies, Inc. (Spring, TX) and were purified by reverse-phase chromatography.
- Cy-5 fluorescent sequencing primers were synthesized by the Molecular Biology Resource Facility, Oklahoma University Health Sciences Center. Nonradiolabeled UDP-GlcUA, and 2,4,6-trihydroxyacetophenone were from Fluka.
- UDP-GlcNAc was from Sigma.
- UDP-[ 14 C]GlcUA (300 mCi/mmol) and 14 C- NEM (40 mCi/mmol) were from New England Nuclear. Agarose was from Bio- Rad.
- (+)-Biotinyl-3-maleimidopropionamidyl-3,6-dioxaoctanediamine (biotin- PEO-maleimide) was from Pierce Chemical Co. NEM and all other reagents were from Sigma unless otherwise noted.
- the seHAS gene with a fusion at the 3' end encoding a His 6 tail was cloned into pKK233.
- Mutagenic primers were designed to change the cysteines to either Ala or Ser at positions 226, 262, 281 and 367.
- Two complementary oligonucleotide primers encoding the desired mutation were used to create the single Cys mutations (Table X). Mutagenesis was carried out using the Quick Change method according to the manufacturer's instructions.
- the pKK233 plasmid containing the seHAS-His 6 gene was grown in SURE cells, purified using a Spin Miniprep Kit (Qiagen) and analyzed by agarose gel electrophoresis to verify the correct size.
- the purified pDNA was used as the template for the primer extension reaction with a pair of mutagenic primers.
- the PCR Amplification conditions for PCR were 16 cycles of the following: 95°C for 1 min, 58°C for 1 min, and 68°C for 18 min. This amplification generated mutated plasmids with staggered nicks, which was then treated with Dpt?I to digest the methylated and
- Oligonucleotides for Cys-to-Ser/Ala site directed mutagenesis of spHAS.
- Cys residues within spHAS at positions 124, 225, 261, 280, 366 and 402 were converted either to Ser using a single mutagenic oligonucleotide, complementary to the coding strand, and the Altered Sites kit or to Ala using a pair of complementary mutagenic oligonucleotides and the Quick Change Mutagenesis kit (in the latter case only the forward primers complementary to the coding strand are shown). The altered codons are indicated in boldface.
- C124S 5'-TAACGTTTCGAGAAATATCCAC
- C225S 5'-GGTCCTGAGGAAACTAAAAT
- C261S 5 '- ATTTGTTAAAG ATCG ATCATC
- C280S 5'-ATCAGTATCAGATCTAGCTGT
- C366S 5'-AACATTACGAGATAAAGCAAC
- C402S 5 '-TTTAATGGTGG ATAAAGAATA
- C124A 5'-AACGATAACGTTTCGAGCAATATCCACTTCTCT
- C225A 5'- CAATGGTCCTGAGGCAACTAAAATATTACC
- C261A 5'-AGCATAATTTGTTAAAGCTCGATCATCCCCAAT
- C280A 5'-AGGTACATCAGTATCAGCTCTAGCTGTTGATTG
- C366A 5'- AACATTACGAGCTAAAGCAAC
- C402A 5'-CGTA I I I I I I I AATGGTGGCTAAAGAATAAAG1 TABLE XII
- Cysteines listed may be mutated to Alanine, Serine, or any other amino acid as described herein previously.
- all the mutations may be the same (i.e., all Cys-Ala mutations), or a mutant containing multiple Cysteine mutations may have a combination of Cys-Ala, Cys-Ser and Cys-Xaa mutations.
- the digested pDNA was transformed into SURE cells and colonies were screened for the desired mutations by sequencing the isolated plasmid DNA using fluorescently labeled terminators (ABI Prism 377 MODEL program, v2.1.1). The complete ORFs of selected mutants were confirmed by sequencing in both directions with Cy-5 labeled vector primers on a Pharmacia ALF Express DNA Sequencer. Data were analyzed using ALF Manager, v3.02. The double, triple and null Cys-mutants of seHAS-His 6 were made using the appropriate single, double or triple Cys-mutant plasmid DNA as the template, respectively.
- Single mutants of spHAS were generated by the Altered Sites Mutagenesis or Quick Change Mutagenesis protocols using primers (Table XI) designed to change the Cys residues at positions 124, 225, 261, 280, 366, or 402 of spHAS containing His 6 at the C-terminus (Tlapak-Simmons, et al., 1999a).
- primers Table XI
- Cys-to-Ala mutants of spHAS were generated directly in the pKK3K vector using the Quick Change mutagenesis method. Site directed mutagenesis was used to generate the C124, C402A double mutant, and then C366A was added by restriction fragment exchange to generate a triple mutant. Site directed mutagenesis was also used to create the double mutant spHAS(C261A,C280A).
- the mutants containing five or six mutated Cys residues were generated by utilizing restriction sites to combine fragments of spHAS containing different mutations. For example, Avrll and Mfel were used to combine the spHAS(C124A,C366A,C402A) triple Cys-mutant and the spHAS(C261A,C280A) double mutant to create spHAS with only Cys 225 intact. Finally, Bglll and Avrll were used to splice spHAS(C225A) into the latter quintupleCys-mutant to generate the Cys-null clone, designated spHAS Cys nu ". All Cys-to-Ala/Ser mutants were confirmed over the full ORF by automated DNA sequencing.
- E. coli SURE cells transformed with plasmids containing various seHAS mutants were grown in LB medium with vigorous shaking at 32°C to A 600 ⁇ 0.8 and induced with 1 mM isopropyl- ⁇ -thiogalactoside for 3 h. Cells were harvested and membranes were prepared as described previously.
- the kinetic constants for HAS were determined at 37°C in 100 ⁇ l of 50 mM sodium and potassium phosphate, pH 7.0, with 20 mM MgCI 2 , 1 mM DTE, 240 ⁇ M UDP-GlcUA, 0.7 ⁇ M
- Some assays also contained 0.1 mM EDTA and 20% glycerol (v/v). To initiate the enzyme reaction, ⁇ 0.5-40 ⁇ g of membrane protein was added and the mixtures were gently shaken in a MicroMixer X-36 (Tiatec) at 30°C for 1-2 h. Reactions were terminated by the addition of SDS to a final concentration of 2% (w/v). The incorporation of radioactive [ 14 C]GlcUA was determined by descending paper chromatography and the K m and V max values were determined as described by Tlapak-Simmons et al (1999b). Data were analyzed by the methods of Michaelis-Menton or Hill.
- the relative M r of the HA synthesized by wild-type seHAS or the Cys- mutants was determined by agarose gel electrophoresis of 14 C-labeled HA products synthesized under the assay conditions described above.
- the wild- type seHAS synthesizes and releases an HA chain in ⁇ 5 min under these steady-state conditions, so that each enzyme molecule on average synthesizes > 10 HA chains during the incubation. Reactions were terminated by heating at 95°C for 1 min, the mixtures were then centrifuged at high speed and the HA- containing supernatants were recovered.
- the samples were concentrated ⁇ 10- fold using Microcon YM-3 filters (Amicon Bioseparations, Inc.) and treated with DNase and RNase (4 ⁇ g/ml each) in the presence of 60 mM MgCI 2 for 30 min at 22 °C.
- the samples and a combination of DNA standards were then electrophoresed on a 1.3% (w/v) agarose gel at 80-90 V.
- the gels were dried without heating and exposed to Biomax-MR film (Kodak) for 1-4 weeks.
- the autoradiograms were scanned to create digital files using a FluorchemTM8000 (Alpha Innotech Corp.) image analysis station.
- HAS mutant HA size distribution was determined by agarose gel electrophoresis.
- Membranes containing wildtype or mutant Has were incubated in 0.5 mM UDP-GlcUA and 1.5 mM UDP-GlcNAc in 25 mM sodium/potassium phosphate, pH 7.0, 75 mM NaCl, 1 mM DTT, 15% glycerol, 10 mM MgCI 2 , with 0.68-8.16 ⁇ M UDP-[ 14 C]GlcUA for one hour at 30°C, while shaking in a Taitec E-36 micromixer. EDTA was added to 0.1 M to stop the reactions.
- HA chain size was estimated by migration distance relative to DNA standards.
- HA product size distribution was estimated by integration over MW ranges of the integrated density value (IDV) curve obtained for each lane.
- IDV integrated density value
- peak size was designated by the MW range in which the greatest IDV was located.
- the recombinant seHAS protein in isolated membranes is a major component comprising ⁇ 5-8% of the total protein, is well separated from other major proteins by SDS-PAGE and can be readily identified in Coomassie Blue- stained gels.
- E. coli membranes containing wild-type or mutant seHASs were solubilized and electrophoresed on 10% (w/v) gels following the procedure of Laemmli for SDS-PAGE.
- the amount of seHAS protein in each membrane preparation was quantitated by image analysis of the stained gel using a FluorchemTM8000 (Alpha Innotech Corp). The linearity of Coomassie Blue- stained seHAS bands was verified by loading different amounts of membrane protein.
- Coomassie Blue-stained gel was scanned using a Model PDSIP60 densitometer (Molecular Dynamics), then treated with scintillants and subjected to fluorography using Biomax-MR (Kodak) film and an exposure of approximately one week.
- Wild-type seHAS-His 6 was bound to a Ni +2 -nitrilotriacetic acid chelate resin (Qiagen), washed and treated with biotin-PEO-maleimide (10 mg/ml) for 2 h on ice. After washing the column, the enzyme was eluted with distilled water containing 0.5% (v/v) trifluoroacetic acid and 0.02% (w/v) dodecylmaltoside.
- the degree of modification of Cys residues in treated seHAS samples was determined using a MALDI-TOF Voyager Elite mass spectrometer (Applied Biosystems, Framingham, MA), which was equipped with a N 2 laser (337nm), located in the NSF EPSCoR Oklahoma Laser Mass Spectrometry Facility.
- the sample (1 ⁇ l) was spotted to a sample plate, followed by matrix solution ( 1 ⁇ l) and allowed to air dry.
- the matrix used was a 20 mg/ml solution of 2,4,6- trihydroxyacetophenone in 50% acetonitrile containing 0.1% trifluoroacetic acid and 0.05% (w/v) dodecylmaltoside.
- Membranes were isolated from E. coli SURE strains expressing mutant or wildtype spHAS, fractionated by SDS-PAGE according to the procedure of Laemmli (1970) and the proteins were electrotransferred to nitrocellulose as described by Towbin et al. (1979) with minor modifications (Tlapak-Simmons, et al., 1998). Western analysis was performed by incubating these blots for 1 h at room temperature with a biotinylated anti-His 5 monoclonal antibody, as the primary antibody, then washing and incubating with 3 ⁇ g/ml 125 I-streptavidin, prepared as described hereinabove.
- E. coli SURE cells previously transformed with plasmids containing wildtype or mutant spHAS genes, were grown to an A 600 of ⁇ 1.2 and induced with 1 mM isopropyl thio- ⁇ -D-galactoside for three h. Cells were harvested and membranes were prepared as described previously (Tlapak-Simmons, et al., 1999a). The activities of mutant spHAS variants were assessed by measuring their V max and K m values in isolated membranes, normalized as described above for the amount of enzyme expressed.
- the K m values were determined using a descending paper chromatography assay (Tlapak-Simmons, et al., 1999b), holding one UDP-sugar substrate constant and varying the other from 0.01 to 4 mM. Data were analyzed by linear regression using Haynes-Wolf plots for UDP-GlcUA or Hill plots for UDP-GlcNAc. Inhibition of spHAS activity by NEM
- Membrane preparations from wildtype and various spHAS mutants i.e. C124,402A, C261,280A, C124,366,402A, C124,261,280,366,402A, and the Cys-null mutant
- C124,402A, C261,280A, C124,366,402A, C124,261,280,366,402A, and the Cys-null mutant were incubated in 50 mM sodium, potassium phosphate, pH 7.0, 75 mM NaCl and 10% (v/v) glycerol with or without 20 mM NEM for 90 min on ice.
- the enzyme was incubated with biotin-PEO-maleimide (10 mg/ml) in the presence or absence of 6 M guanidinium-HCI for 2 h at 4°C.
- the column was washed and spHAS-His 6 was eluted with distilled water containing
- Samples were analyzed in the linear, positive ion mode using a delayed extraction of 300ns, a grid voltage of 87.8%, and were subject to a 25kV accelerating voltage. External calibrations were performed routinely using horse apomyoglobin and bovine serum albumin (16,951 and 66,430 Da, respectively).
- the invention includes a functionally active hyaluronan synthase having
- the invention may comprise, consist of, or consist
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Genetics & Genomics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biotechnology (AREA)
- Microbiology (AREA)
- Biochemistry (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Molecular Biology (AREA)
- General Chemical & Material Sciences (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Medicinal Chemistry (AREA)
- Biomedical Technology (AREA)
- Micro-Organisms Or Cultivation Processes Thereof (AREA)
- Preparation Of Compounds By Using Micro-Organisms (AREA)
- Enzymes And Modification Thereof (AREA)
Abstract
Description
Claims
Priority Applications (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CA002469566A CA2469566A1 (en) | 2001-12-03 | 2002-12-03 | Hyaluronan synthases and methods of making and using same |
EP02794128A EP1478746A4 (en) | 2001-12-03 | 2002-12-03 | Hyaluronan synthases and methods of making and using same |
AU2002359581A AU2002359581B2 (en) | 2001-12-03 | 2002-12-03 | Hyaluronan synthases and methods of making and using same |
Applications Claiming Priority (4)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US33610501P | 2001-12-03 | 2001-12-03 | |
US60/336,105 | 2001-12-03 | ||
US10/011,771 US7109011B2 (en) | 1994-07-01 | 2001-12-11 | Hyaluronan synthase gene and uses thereof |
US10/011,771 | 2001-12-11 |
Publications (2)
Publication Number | Publication Date |
---|---|
WO2003048330A2 true WO2003048330A2 (en) | 2003-06-12 |
WO2003048330A3 WO2003048330A3 (en) | 2004-09-23 |
Family
ID=29738612
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/US2002/038596 WO2003048330A2 (en) | 2001-12-03 | 2002-12-03 | Hyaluronan synthases and methods of making and using same |
Country Status (5)
Country | Link |
---|---|
EP (1) | EP1478746A4 (en) |
CN (1) | CN1596307A (en) |
AU (1) | AU2002359581B2 (en) |
CA (1) | CA2469566A1 (en) |
WO (1) | WO2003048330A2 (en) |
Cited By (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP1481052A2 (en) * | 2001-06-13 | 2004-12-01 | Board Of Regents Of The University Of Oklahoma | Hyaluronan synthase genes and expression thereof |
Families Citing this family (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN106680104B (en) * | 2016-11-29 | 2020-04-14 | 西南石油大学 | Dynamic and static rock mechanical parameter correction method and device |
Citations (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US6423514B1 (en) * | 1996-04-22 | 2002-07-23 | Millennium Pharmaceuticals, Inc. | Mammalian hyaluronan synthases, nucleic acids and uses thereof |
-
2002
- 2002-12-03 AU AU2002359581A patent/AU2002359581B2/en not_active Ceased
- 2002-12-03 EP EP02794128A patent/EP1478746A4/en not_active Withdrawn
- 2002-12-03 CN CNA028266943A patent/CN1596307A/en active Pending
- 2002-12-03 WO PCT/US2002/038596 patent/WO2003048330A2/en not_active Application Discontinuation
- 2002-12-03 CA CA002469566A patent/CA2469566A1/en not_active Abandoned
Patent Citations (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US6423514B1 (en) * | 1996-04-22 | 2002-07-23 | Millennium Pharmaceuticals, Inc. | Mammalian hyaluronan synthases, nucleic acids and uses thereof |
Non-Patent Citations (4)
Title |
---|
DEANGELIS ET AL: 'Molecular cloning, identification, and sequence of the hyaluronan synthase gene from group A streptococcus pyogenes' J. BIOL. CHEM. vol. 268, 15 September 1993, pages 19181 - 19184, XP002921443 * |
HELDERMON ET AL: 'Site-directed mutation of conserved cysteine residues does not inactivate the Streptococcus pyogenes hyaluronan synthase' GLYCOBIOLOGY vol. 11, no. 12, 2001, pages 1017 - 1024, XP002978941 * |
KUMARI ET AL: 'Molecular cloning, expression, and characterization of the authentic hyaluronan synthase from group C Streptococcus equisimilis' J. BIOL. CHEM. vol. 272, no. 51, 19 December 1997, pages 32539 - 32546, XP002105371 * |
See also references of EP1478746A2 * |
Cited By (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP1481052A2 (en) * | 2001-06-13 | 2004-12-01 | Board Of Regents Of The University Of Oklahoma | Hyaluronan synthase genes and expression thereof |
EP1481052A4 (en) * | 2001-06-13 | 2005-11-16 | Univ Oklahoma | Hyaluronan synthase genes and expression thereof |
Also Published As
Publication number | Publication date |
---|---|
CN1596307A (en) | 2005-03-16 |
CA2469566A1 (en) | 2003-06-12 |
AU2002359581A1 (en) | 2003-06-17 |
EP1478746A2 (en) | 2004-11-24 |
WO2003048330A3 (en) | 2004-09-23 |
EP1478746A4 (en) | 2005-06-29 |
AU2002359581B2 (en) | 2008-01-10 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
US7141409B2 (en) | Hyaluronan synthase gene and uses thereof | |
AU2008202651B2 (en) | Hyaluronan synthase genes and expression thereof | |
US20060211104A1 (en) | Hyaluronan synthases and methods of making and using same | |
US8735102B2 (en) | Hyaluronan synthase genes and expression thereof in Bacillus hosts | |
US6951743B2 (en) | Hyaluronan synthase genes and expression thereof in bacillus hosts | |
US7029880B2 (en) | Streptococcus equisimilis hyaluronan synthase gene and expression thereof in Bacillus subtilis | |
US20070020737A1 (en) | Hyaluronan synthases and methods of making and using same | |
AU2002359581B2 (en) | Hyaluronan synthases and methods of making and using same | |
WO2007016221A2 (en) | Hyaluronan synthases and methods of making and using same |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
AK | Designated states |
Kind code of ref document: A2 Designated state(s): AE AG AL AM AT AU AZ BA BB BG BR BY BZ CA CH CN CO CR CU CZ DE DK DM DZ EC EE ES FI GB GD GE GH GM HR HU ID IL IN IS JP KE KG KP KR KZ LC LK LR LS LT LU LV MA MD MG MK MN MW MX MZ NO NZ OM PH PL PT RO RU SC SD SE SG SK SL TJ TM TN TR TT TZ UA UG US UZ VC VN YU ZA ZM ZW |
|
AL | Designated countries for regional patents |
Kind code of ref document: A2 Designated state(s): GH GM KE LS MW MZ SD SL SZ TZ UG ZM ZW AM AZ BY KG KZ MD RU TJ TM AT BE BG CH CY CZ DE DK EE ES FI FR GB GR IE IT LU MC NL PT SE SI SK TR BF BJ CF CG CI CM GA GN GQ GW ML MR NE SN TD TG |
|
121 | Ep: the epo has been informed by wipo that ep was designated in this application | ||
DFPE | Request for preliminary examination filed prior to expiration of 19th month from priority date (pct application filed before 20040101) | ||
WWE | Wipo information: entry into national phase |
Ref document number: 2469566 Country of ref document: CA Ref document number: 2002359581 Country of ref document: AU |
|
WWE | Wipo information: entry into national phase |
Ref document number: 2002794128 Country of ref document: EP |
|
WWE | Wipo information: entry into national phase |
Ref document number: 20028266943 Country of ref document: CN |
|
WWP | Wipo information: published in national office |
Ref document number: 2002794128 Country of ref document: EP |
|
NENP | Non-entry into the national phase in: |
Ref country code: JP |
|
WWW | Wipo information: withdrawn in national office |
Country of ref document: JP |
|
ENP | Entry into the national phase in: |
Ref document number: 2002359581 Country of ref document: AU Date of ref document: 20021203 Kind code of ref document: B |